Gene RSp0066 details

Gene Information

• Locus tag: RSp0066
• Symbol: opuA
• ID: 1222614
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: +
• Start bp: 75830
• End bp: 76987
• Gene Length: 1158 bp
• Protein Length: 385 aa
• Translation table: 11
• GC content: 62%
• IMG OID: 637239925
• Product: putative glycine betaine/L-proline ATP-binding ABC transporter protein
• Protein accession: NP_521627
• Protein GI: 17548287
• COG category: [E] Amino acid transport and metabolism
• COG ID: [COG4175] ABC-type proline/glycine betaine transport system, ATPase component
• TIGRFAM ID: [TIGR01186] glycine betaine/L-proline transport ATP binding subunit

Plasmid Coverage information

• Num covering plasmid clones: 20
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 20
• Fosmid unclonability p-value: 1
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

ATGAATAGTC CCAAGGTCGT AATCGAAGGT CTGAGCAAGG TGTTTGGAAG CAACCCGCGT 
CAGGCCATCG ACATGCTTGC TGCCGGGTCA ACGAAAGACG AAGTGTTCAG GCGCACCGGT 
CAGGTCGTCG GGGTGCACGA TGTCTCGTTT GACGTGAAAG AGGGCGAAAT CTTCGTGCTG 
ATGGGCCTGT CGGGCTCTGG CAAGTCGACA TTGATCCGTC TGGTGAACCG GCTCGTGGAG 
CCCACCGCCG GCAAGGTGCT GATCGGTGGC CGCGACGTGG CGGCCGTGAG CCGTTCGGAG 
CTGATTGCGC TGCGGCGCAA AGACATGAGC ATGGTGTTCC AGTCGTTCGC GCTGATGCCG 
CAGCGCACGG TGCTGTCGAA CGCCGCGTTT GGCCTTGAGG TGGCGGGCGT GGCACGGGCG 
GAACGTGAGC GGCGCGCCAT GGAGGTGCTG GAGCAGGTCG GCTTGGCGGC GTTTGCGCAG 
AAGTTGCCGC GCGAGCTGTC CGGAGGCATG CAGCAACGTG TTGGCCTGGC GCGTGCGCTC 
AGCGTCAATC CTTCCTTGAT GATCATGGAC GAGGCGTTTT CGGCGCTGGA TCCGCTCAAG 
CGCAAGGAGA TGCAGAACGT GCTGCTGCAA CTGCAGAAAG ATCACCAGCG AACGATCATG 
TTTGTCTCGC ACGATCTGGA AGAAGCGCTG CGCATCGGCA GCCGGATTGC GATCATGGAA 
GGCGGTCGCC TGGTCCAGGT TGGGACCCCA CAGGAGATCA TCACCAGCCC GGCCAACGAC 
TACGTCCGCA CGTTCTTCGA TGGTATCGAC ACAAGCCGAT ACCTGACCGC AGGCGACCTC 
ATGCAGATGG ACGCCGTGCC CACTGTTTCG AAGCTTGATG CGGCAAGCAT TGCCGCGACG 
CTGAATGGCA GCAACGACTA TGCCTTTGTG CTGGATGCGC GACGTCGGAT CCGCGGGTGT 
GTTACGCGAA GCGCAGCGCC GAACGTGCAG CCCGTCGAGA GCATTCGGCA CGATGCGCCG 
CTCGAGCAGG TCGTCGATCG CGTTGTCGAA AATCCGAATG CGTTGCCCGT TGTAGATCAC 
GACGGCTGCT ACTGCGGCTC GGTGAGCCGT GCCGTCATCC TGAAAGCCAT TACGCGTTCG 
CGAGGCCACC ATGTCTGA 

 

Protein sequence

MNSPKVVIEG LSKVFGSNPR QAIDMLAAGS TKDEVFRRTG QVVGVHDVSF DVKEGEIFVL 
MGLSGSGKST LIRLVNRLVE PTAGKVLIGG RDVAAVSRSE LIALRRKDMS MVFQSFALMP 
QRTVLSNAAF GLEVAGVARA ERERRAMEVL EQVGLAAFAQ KLPRELSGGM QQRVGLARAL 
SVNPSLMIMD EAFSALDPLK RKEMQNVLLQ LQKDHQRTIM FVSHDLEEAL RIGSRIAIME 
GGRLVQVGTP QEIITSPAND YVRTFFDGID TSRYLTAGDL MQMDAVPTVS KLDAASIAAT 
LNGSNDYAFV LDARRRIRGC VTRSAAPNVQ PVESIRHDAP LEQVVDRVVE NPNALPVVDH 
DGCYCGSVSR AVILKAITRS RGHHV