| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSp0046 |
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| Symbol | soxB1 |
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| ID | 1222594 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 50382 |
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| End bp | 51626 |
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| Gene Length | 1245 bp |
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| Protein Length | 414 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637239905 |
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| Product | sarcosine oxidase subunit beta |
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| Protein accession | NP_521607 |
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| Protein GI | 17548267 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0665] Glycine/D-amino acid oxidases (deaminating) |
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| TIGRFAM ID | [TIGR01373] sarcosine oxidase, beta subunit family, heterotetrameric form |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.570395 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGCCACT ACTCGATATT CAGCCTGTTC CGAAATGGCC TCTCGTATCA CGAGAACTGG
GAGCGGCAGT GGAAGAGCCC GGAACCCAAG CGCGAGTACG ACGTCGTGAT CGTCGGCGGC
GGCGGACATG GTCTTGCCAC CGCGTACTAC CTGGCCAAGG AGCACGGCAT CACCAACGTG
GCGGTGCTGG AGAAGGGCTG GATCGGTGGC GGCAACACCG CCCGCAACAC GACCATCGTG
CGCTCGAACT ACCTGTGGGA CGAATCGGCC GCGCTGTACG AAAAGGCGAT GAAGCTGTGG
GAAGGGCTGT CGCAAGACCT GAACTACAAC GTGATGTTCA GCCAGCGTGG CGTGATGAAC
CTCGCCCACA CGCTGCAGGA CGTGCGCGAT ACCGAGCGCC GCGTCAATGC GAACCGGCTG
AACGGCGTGG ATGCTGAGTT CCTGACCCCC GCGCAGATCA AGGAGATCGA GCCGGCGATC
AACCTGAATG CGCGCTATCC GGTGCTCGGC GCGTCGTTCC AGCGGCGTGG CGGTGTCGCG
CGGCATGACG CAGTGGCATG GGGTTTCGCC CGCGGCGCTG ATCGCGCGGG CATCGACATC
ATCCAGAACT GCCAAGTGAC CGGCATTCGC CGTGAAGGCG GTGCGGTGGT TGGCGTGGAG
ACCGCGCGCG GCTTCATCAA GGCCAAGAAA GTGGCCGTGG TTGCCGCCGG CAACACGACA
ACGCTGGCCG ATATGGCCGG CATCCGTCTG CCGCTGGAGA GTCATCCGCT GCAGGCGCTG
GTGTCGGAGC CCATCAAGCC GGTGGTCAAT ACGGTGGTCA TGTCGAACGC AGTGCATGCA
TACATCAGCC AGTCCGACAA GGGCGATCTC GTGATCGGTG CCGGTATCGA CCAATACACC
GGCTTTGGCC AGCGCGGCAG CTTCCACATC ATCGAGAGCA CGCTGCAGGC CATTGTGGAA
ATGTTCCCGG TGTTCTCCCG TGTGCGCATG AACCGGCAGT GGGGCGGCAT CGTGGATGTG
TCGCCGGATG CCTGCCCCAT CATCAGCAAG ACCGATGTGA AGGGCCTTTA CTTCAACTGC
GGCTGGGGCA CGGGCGGCTT CAAGGCAACG CCGGGCTCGG GCTGGGTATT CGCACACACC
ATCGCACGCG ACGAGCCGCA CCCGCTGAAC GCGCCGTTCG CGCTCGACCG CTTCTACACA
GGCCATCTGA TCGACGAGCA CGGTGCCGCT GCCGTCGCTC ACTGA
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| Protein sequence | MSHYSIFSLF RNGLSYHENW ERQWKSPEPK REYDVVIVGG GGHGLATAYY LAKEHGITNV
AVLEKGWIGG GNTARNTTIV RSNYLWDESA ALYEKAMKLW EGLSQDLNYN VMFSQRGVMN
LAHTLQDVRD TERRVNANRL NGVDAEFLTP AQIKEIEPAI NLNARYPVLG ASFQRRGGVA
RHDAVAWGFA RGADRAGIDI IQNCQVTGIR REGGAVVGVE TARGFIKAKK VAVVAAGNTT
TLADMAGIRL PLESHPLQAL VSEPIKPVVN TVVMSNAVHA YISQSDKGDL VIGAGIDQYT
GFGQRGSFHI IESTLQAIVE MFPVFSRVRM NRQWGGIVDV SPDACPIISK TDVKGLYFNC
GWGTGGFKAT PGSGWVFAHT IARDEPHPLN APFALDRFYT GHLIDEHGAA AVAH
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