Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RSp0008 |
Symbol | dctB1 |
ID | 1222637 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 9390 |
End bp | 11294 |
Gene Length | 1905 bp |
Protein Length | 634 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637239867 |
Product | C4-dicarboxylate transport sensor kinase transcription regulator protein |
Protein accession | NP_521569 |
Protein GI | 17548229 |
COG category | [T] Signal transduction mechanisms |
COG ID | [COG4191] Signal transduction histidine kinase regulating C4-dicarboxylate transport system |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 0.368078 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 21 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGCGCTG ACGGCCACGC CGATCCTGCA CACGCCGCGC GCGGACGCGG GCTGCGGCTG GCCGTCGCGC TGGCGATGGC GGCCTGCTGC GCGGCGGCGG GATGGGGCGC CTATGCCCTC GCCCTGCAGC GCTACGTGGC CGCGCGCGCC GAAGAGGCCG GCCAGCGCAC CACGTTCTAT GCCCAGAACC TGCGCGGCAC GCTGGCGCGC TACGAGTCGC TGCCGCGGCT GGCCGCGCTG GAGCATGTGC TGCATGTCGC GCTGACGGCG CCGCATGCGC GCGATGCCGC ACTGCGCCGT GCCGCCGACG CTTATTTGAA GGAAGTCCAG GCCGCGGCCG ACCTGACCGC CGTCTACCTG ATGGACGCCA CCGGCCAGAC CCTCGCCGCG AGCAACTGGG ACCTGCCCTC GTCGTTCATC GGGCGGAACT ATGCGTTCCG GCCGTACTTT GTCGACGCCA TGCGCGAGGG GTTCGGCCGC TTCTACGGCG TGGGCAACAC GACCGGCGAG ACCGGCTACT TCCTGGCCGC GCCCGTGCGC GAGGGCGGCC AGCCCATCGG CGCGCTGGCG GTCAAGATCA ACCTGGATTC GTTCGAGGCG ACGCTGGCGC GCAGCGGCGA TACCGTGCTG CTGGTCGATC GCCATGGCGT GATCTTTCTG TCGTCGGTGC CCGAGTGGAA GTACCGTACG CTCGGCACGC TGAGCGCGGC GCAGCGCGCA GCGCTGGATG CGACGCGGCA ATACGGGCCG CACGCGCTGG CGCCGCTCGA TCCGCGGGCC GGGAGCGTAC CCTTTTCTGC GGACCAGGTG CCGCAGACGC TGCGCGTGGC GTTGCCCGGC CGCTCGGTGT CAACGCTGCG GGTGCAATAT CGGCCGGTCG GCCTGCTCGG CTGGCAGGTT GCCGTGCTGA TCGATCCGCG CGACGAGCGG CGGACCGCGC TGGTGGCCGG CGCCAGCGCC GCGTTTGCGA CGGCGCTGGC TTTTGCGGTG TGCGTTGCGC TGCGGCTGCG GGCGCGGCGG CACGAGGAGC AGCGCCGTGC CCGCGCCGCG CTGCGAGAAG TCCAGCGCGA CCTGGAGGCG CGCATTGCCC AACGCACCGC CGAGCTGACC TCGGCCAATG CGGCGCTCGC CTCCAAGGTG GAGGCGCTCG ACACCGCGCA GCGCATCCTG CGCGAGACGC GCGATGCCGC CGTGCAGGCC GGCAAGCTGG CCGTGCTGGG CCAGATGGCC GCCGGCATCA CACATGAGCT GAACCAGCCG CTGACCGCGC TGACCACGCT GTCCGACAAC GCCAACCAGC TTGCCGAGCG TGGCCGTGTC GACGAGGTGC GCGGCAATCT CGCGCACATC AGCCAGCTCG CGCATCGCAT GGGCCGCATC GTGTCGCACA TCAAGGGGTT CGCCCGCAAG GGCGACGCGG CACGCGCGGC CGTGCCGGTG GAGGAGGCGA TCCGCCAGGC GCTGATGCTG GTGGAGACGC GCCGCCGCCA GGCGGGCGTG CCGGTGGTGG TCGGGCCGGT GCCGCCCGGC GTGGCGGTGT GGGCCAACGC GGTGCGGCTG GAGCAGGTGC TGGTCAACCT GATCCGCAAC GCCATCGATG CCACCGCCGA GGCGCCGCGG CCGGAGGCTG CCGGCGTGCG GGTCACGGCG CAGGCGGACG ATGCGCTCGT GCGCATCACC GTGCGCGACG CCGGCCCGGG CATCGCGCCG GAGGTGTTGC CGCATCTGTT CGAACCGTTT TTCACCACCA AGGCGGACGG CCAGGGCCTC GGCCTCGGGC TGGCGATTTC GCTGGCGATC GTTGAAGATT TCGGCGGGCG GCTGGAAGGC CGCAATGCCG ACGACGGTGC GGGCGGTGCC GCGTTCGTCA TCGAGCTGGA ACGTGCCATG GAGCCGCATG CCTGA
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Protein sequence | MSADGHADPA HAARGRGLRL AVALAMAACC AAAGWGAYAL ALQRYVAARA EEAGQRTTFY AQNLRGTLAR YESLPRLAAL EHVLHVALTA PHARDAALRR AADAYLKEVQ AAADLTAVYL MDATGQTLAA SNWDLPSSFI GRNYAFRPYF VDAMREGFGR FYGVGNTTGE TGYFLAAPVR EGGQPIGALA VKINLDSFEA TLARSGDTVL LVDRHGVIFL SSVPEWKYRT LGTLSAAQRA ALDATRQYGP HALAPLDPRA GSVPFSADQV PQTLRVALPG RSVSTLRVQY RPVGLLGWQV AVLIDPRDER RTALVAGASA AFATALAFAV CVALRLRARR HEEQRRARAA LREVQRDLEA RIAQRTAELT SANAALASKV EALDTAQRIL RETRDAAVQA GKLAVLGQMA AGITHELNQP LTALTTLSDN ANQLAERGRV DEVRGNLAHI SQLAHRMGRI VSHIKGFARK GDAARAAVPV EEAIRQALML VETRRRQAGV PVVVGPVPPG VAVWANAVRL EQVLVNLIRN AIDATAEAPR PEAAGVRVTA QADDALVRIT VRDAGPGIAP EVLPHLFEPF FTTKADGQGL GLGLAISLAI VEDFGGRLEG RNADDGAGGA AFVIELERAM EPHA
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