| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05645 |
|---|
| Symbol | RSp1162 |
|---|
| ID | 1223474 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1461538 |
|---|
| End bp | 1463076 |
|---|
| Gene Length | 1539 bp |
|---|
| Protein Length | 512 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 71% |
|---|
| IMG OID | 637241027 |
|---|
| Product | two-component sensor histidine kinase transcription regulator protein |
|---|
| Protein accession | NP_522723 |
|---|
| Protein GI | 17549383 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG0642] Signal transduction histidine kinase |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 20 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTGT CTTTCGGCAT CACCTCCAAG CTGTTCGTCG CGCTGTTCGC GCTGAGCATG
GTCGTCGCGC TCGCCATGGG CGCGGCGGTG CGCTGGCGTT TCGACACCAA CTTTCTCGAC
TACGTCAACG CTCGCGAAGC CGAGCGCATG GCGGTGTTTG CCCAGAGCAT CGAATCGGTC
TATGCCGAGC ATGGGAACTG GGGTGTCCTG CGCAATGACC GGCAGGCCTG GTACCGCCTG
ATCCGGCGCG AGATCGGCCG CACGCATGCG GGGCCATTCG GCGGTCCGCG CGGTGATGCA
GAGCCTGTGC CGCCCTTCGC TCCGCCGCCG GGGGACGTGC CGCCGCCCGG TCTGCCGCCG
CCGCCTCCGG ATGCCGGCGA TCGCCCGCCG CAGCATCCGC CTGGCGAAGG GCCCGGCATG
CATCCGCCGA TCTGGCTGCT CGATGCCGGG CGCGTCCCGA TTGTCGGCGA CGGCCCGCCG
CCCGGCCCGG GTTCGCAGTG GCATGCGCTG CATCACAACG GCCAGACCGT CGGCTGGCTG
GCGACCCCGC AGCGCATGCA CGTGCCCGAG GGGGCCGACC AGGCCTTCCT GGCCCAGCAG
CTGCGCGCCA CCTGGATCAT CGCCGCGCTG TCGGTGCTGC TCGCGGCGGG CGTGGCGATC
CTGCTCGCGC GCGGCGTGCT GGCGCCGATG CGGCGGCTGG CCCATGCCAC GCGCCGCATG
GCCGAGGGCG ACTACGCGGC GCGGGTCGAT GTGCATTCGG GCGACGAGAT CGGCCACCTG
GCCGACGATT TCAACCGGCT GGCCGAAACG CTCGAGGCCA ACCAGAAGAT GCGCCGCCAG
CTGACGGCCG ACATTTCGCA CGAACTGCGC ACGCCGCTGG CGGTGCTGCG CGGCGAACTG
GAGGCGCTCG AGGACGGCGT GCGGGCCCTC ACGCCCGCGT CGCTGACCTC GCTGCAGGCC
GAGGTGGGCA CGCTGTCCAA GCTGATCGAC GATCTGTACG AGCTGTCCCT GGCCGATGTG
GGCGCGCTGG CTTTCCACAT GGAGTCGATC GACCTGGCCG ATACCGTATG CAGCGCGGCG
CAGGGGTTCA CCCCGCGCCT GATGGACAAG CGCATCGCCT TGCAGCTCGA CCTGCCGACG
GGGCCGTCGC GCGACGCGGC CATCCAGGGC GATCCGCAGC GCCTGCGCCA GCTGATGCAG
AACCTGCTGG AGAACACGCT GCGCTATACC GACGCGGGCG GCACGCTGCG CATCCACGTC
CATCGCGCAG GCGCGTGGTG GTGCCTGGAC GTGCAGGACA GCGCGCCGGG CGTGCCGGAG
GCGATGCTGC CGCGCGTGTT CGACCGGCTG TTCCGCGCCG ATCCTTCCCG GGGCCGCGCG
CAAGGCGGGG CCGGGCTGGG CCTGAGCCTG TGCCAGACTA TCGTGCAGAC GCACGGTGGC
ACCATCGACG CCAGACCTTC ACCGCTGGGC GGGCTGTGGA TTGCGATCCG CCTGCCGGCT
GCCAACTCCT CTGTTGCTGA CCATGATCCT GATCGTTGA
|
|---|
| Protein sequence | MRLSFGITSK LFVALFALSM VVALAMGAAV RWRFDTNFLD YVNAREAERM AVFAQSIESV
YAEHGNWGVL RNDRQAWYRL IRREIGRTHA GPFGGPRGDA EPVPPFAPPP GDVPPPGLPP
PPPDAGDRPP QHPPGEGPGM HPPIWLLDAG RVPIVGDGPP PGPGSQWHAL HHNGQTVGWL
ATPQRMHVPE GADQAFLAQQ LRATWIIAAL SVLLAAGVAI LLARGVLAPM RRLAHATRRM
AEGDYAARVD VHSGDEIGHL ADDFNRLAET LEANQKMRRQ LTADISHELR TPLAVLRGEL
EALEDGVRAL TPASLTSLQA EVGTLSKLID DLYELSLADV GALAFHMESI DLADTVCSAA
QGFTPRLMDK RIALQLDLPT GPSRDAAIQG DPQRLRQLMQ NLLENTLRYT DAGGTLRIHV
HRAGAWWCLD VQDSAPGVPE AMLPRVFDRL FRADPSRGRA QGGAGLGLSL CQTIVQTHGG
TIDARPSPLG GLWIAIRLPA ANSSVADHDP DR
|
|---|
| |