| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05506 |
|---|
| Symbol | RSp1114 |
|---|
| ID | 1223426 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1411431 |
|---|
| End bp | 1412957 |
|---|
| Gene Length | 1527 bp |
|---|
| Protein Length | 508 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 74% |
|---|
| IMG OID | 637240979 |
|---|
| Product | putative outer-membrane drug efflux protein |
|---|
| Protein accession | NP_522675 |
|---|
| Protein GI | 17549335 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG1538] Outer membrane protein |
|---|
| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCGC TCAAACAACA ACAGGGCGGG CCCGCGCGGC CGGGCCGCTG GACCCCGCTG
GCGCTGGCCG CCGCGCTGTT CCTCGCGGCC TGCTCGCTGG CGCCGACCTA CGAAAAACCG
GACGTCGGCA CCCCGACCGC CTTCAAGGAA GCCGCCCAGG GCGCCGATGC GCCGCTGGCC
GCCGGCGAGC AAGGCAAGTG GAAGACTGCC GAGCCCTCCA TGCCGACCGA CGGCGCGTGG
TGGAAGCTGT TCAACGACGC CACGCTCGAC AGCCTGGAAG CCCAGGCCGG CGAGGCCAGC
CCCACGCTGG CCGCCGCCGC CGCGCGCGTC AGCCAGGCCC GCGCCATCGT GCAATCCAAC
CGCGCGGCGC TCTTCCCCGA ACTGGATGCG GGCTTCGGCC CGACACGCCA GCGCGCCTCC
GCGGCATCGG CGGGGCTGCC GGTCGGTGCA CCGGTACAGC CGCAGACCTA CTGGCGCGCG
CAGACCACCG TCTCGTATGA GGCCGACCTG TTCGGCCGCG TGCGCAACAG CGTGAACGCC
GCCGATGCCG ACGCCGAGCG CGTGGAAGCG CTCTACCGCG CGGCCCGCCT GTCGCTGCAG
GCCGACGTGG CGCAGACCTA CTTCAGCCTG CGCACGCTCG ACGCCGAAGA AGCCCTGCTC
GCCCGCACCG TGGTCGGCCG CGAAGAGGCG CTCAAGCTGG TGCAGCGCCG CTTCAGCACC
GGCGACATCG GCGAGCTGGA CGTCGCCCGC GCCGATGCCG AACTGGCCAC CGCCCGCTCG
GACCGCCTCG ATGTGGCGCG CCGCCGCGCC TTGCTGGAGC ACGCGCTGGC GACCCTGCTG
GGCAAGGCGC CCTCGGGCTT CACCTTGGGC GCCGACCCGC TGCAGGCGGC CAACGTGCGC
GTGCCGCCCG GCCTGCCCTC CGCCCTGCTG GAGCGCCGCC CCGACGTGGC CGCCGCCGAG
CGCGCGATGG CCGCCGCCAA TGCGCGCATC GGCGTGGCGC GCGCGGCGTT CTTCCCGCAA
CTGCAGCTCA CGGGCGGCTT CGGCTTCGAG TCGCACGACA TCGGCGATCT GCTCAAGTGG
AGCAGCCGCA CCTGGCTCCT CGGGCCGCTG GTGGGCACCG CGCTGTCGCT GCCGATCTTC
GACGGCGGCG CGCGCAGCGC CGGCGTCAAG CAGGCCCGCG CCGCCTACGA GGAAAACGTC
GCCAACTACC GCGAGGCCGT GCTGGTGGCC TTCCGCGAGG TGGAAGACAA CCTCTCCGAC
CTGCGCCTGC TGGCCGACCA GTCCAAGGTG CAGGACGACG CCGTGCGCGC CTCCACGCGC
GCCGCGCAGC TCTCGCGCAC GCGCTACAAC GCGGGCTCGG TCAACTACCT CGACGTGATC
GATGCCGAAC GCAACATGCT GTCGACGCAG CGCGTGGCGG TGCAGCTGGC CGGCGGGCGC
GTGAATGCGA CGGTGGGGCT GGTGAAGGCA CTGGGCGGCG GATGGGGCGA CCCGCCGGCG
CCGCAGACCA CGGTGAGCCA GCGATAG
|
|---|
| Protein sequence | MNALKQQQGG PARPGRWTPL ALAAALFLAA CSLAPTYEKP DVGTPTAFKE AAQGADAPLA
AGEQGKWKTA EPSMPTDGAW WKLFNDATLD SLEAQAGEAS PTLAAAAARV SQARAIVQSN
RAALFPELDA GFGPTRQRAS AASAGLPVGA PVQPQTYWRA QTTVSYEADL FGRVRNSVNA
ADADAERVEA LYRAARLSLQ ADVAQTYFSL RTLDAEEALL ARTVVGREEA LKLVQRRFST
GDIGELDVAR ADAELATARS DRLDVARRRA LLEHALATLL GKAPSGFTLG ADPLQAANVR
VPPGLPSALL ERRPDVAAAE RAMAAANARI GVARAAFFPQ LQLTGGFGFE SHDIGDLLKW
SSRTWLLGPL VGTALSLPIF DGGARSAGVK QARAAYEENV ANYREAVLVA FREVEDNLSD
LRLLADQSKV QDDAVRASTR AAQLSRTRYN AGSVNYLDVI DAERNMLSTQ RVAVQLAGGR
VNATVGLVKA LGGGWGDPPA PQTTVSQR
|
|---|
| |