| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05482 |
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| Symbol | RSp1137 |
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| ID | 1223449 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1432475 |
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| End bp | 1437028 |
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| Gene Length | 4554 bp |
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| Protein Length | 1517 aa |
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| Translation table | 11 |
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| GC content | 69% |
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| IMG OID | 637241002 |
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| Product | putative RHS-related transmembrane protein |
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| Protein accession | NP_522698 |
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| Protein GI | 17549358 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[S] Function unknown |
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| COG ID | [COG3209] Rhs family protein
[COG4104] Uncharacterized conserved protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 7 |
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| Plasmid unclonability p-value | 0.489685 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.876645 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCCGATC ACGATCCGAG TACGCAACCG CCCGCCGAGC CGAGCGGCAG CGCCGAAGCG
CGCCTGGCCG CGCTGCAGAC ACTGGAAAAC GGCGAGGCGA CCAAGCAGTC CCAGATGAAA
TGGGTGGACG GCGCCAACTA CGGCATGCTC GGCGCCGATG TGGGGTATGG CGTCTATGCG
GCGGGCTCCG CCGCGATGGG CGCGGGCGCA ACCGGTGCCG CGGCCGCCGG CGCCGCCGCG
GTGGCCGCGG TGCCGGCCGT CGTGGCGCTG GGCGGGTCGT GGCTGCTCGG CAAGATGGGT
GTCACGGGCA AGCTCGAGGA GGGCTTCGAG TGGGTCGGCG ACAAGCTGGG CCTGACCATC
GGGCGGGGCG ATCCGCATCC GGCCTGCGTC GGCGACGACA TCGCGCACTC CTCGGGCTTC
TGGGGCATGG TCGCGGGGCT GGCGGTGGGC GTCGCGATCG GTGCGATGGT GGCGGCGACC
GTGGCGACCG GCGGGCTGGC CGGCGCCCTG CTGGTCGGGG CCTGCATGGC GGGCGGTCTG
AGCATCGGCG GCGCGCTGGC GGGGGCCAGC CAGAACATGG GCAGCAACTG CGGCAAGATC
GCCACGGGCT CGGGCAACGT CACCTTTGAA GGCAAGGCCG CCGCGCGCGT GACGGACCTG
ATCGCCTGCA CCAAGCACCC CGGGCCGGAG CCGCTGGTCG AAGGCAGCCT GACCATCACG
ATCAACGGAT TGCCGAGCGT GCGCATCGGC CATGCGTCGC ATTGCAGCGG CAAGGTCAAC
TCGGGCCGCA AGAGCATCTG GATCGACAAG ACCACCGGCC AGTTCGGGCC CAAGAACCCC
GAGCTGACCG CCGGCGAGGA ATTCCTCGCC GGGCTGCTGG GCGGGCTGGT CGGCGCCAAG
ATCGGCGGCG CGGTCGGCAG GGGCCGGCGC GAGCCGACCG AGTCCGCCGA GCGGCAGGGC
GTCAAGGACG AGACCACCAC GCCCTGCAAG GACCCGATCG ACGTCGCCAC CGGCGAGATG
GTCGATTTCC GCGACGATCT CGCCATCCCC GGCGTCCTGC CGCTGACGCT GACGCGCCGC
TACCGGACGC GCTCCGACGA CGCGGGCCTG CTCGGGCCGA AGTGGTCGGT CAACTGGTCG
CAGCATCTGC GCCTGGACGA TGGCCACCTC GTCCGCTTCA ACGATGGCGG CGGCCTGATC
ATCACCTTCG AGGCTCCGGA CGCGGAGCTC AACGGCATCA ACCTGCGCGA GCCGCGCTAC
CGCCTGGAAG GCACCCGCGC CGCACCGCGC ATCCTCGACG ACGACACGCG CCGGGTGCTG
GTCTTCTCGC CGCTGGCCGA CGGCGCCGTC GCGCGGCTGG AGCGCATCGA AGACCACAGC
GGCAACGCCA TCGCCTTCGA TTACGACGAG CACGGCCGCC TGATCGCGCT GCGGCATACC
TCGGGTTACC GGCTCGCGCT GGCCTACCCG GGCGGCGCGC ACACCGTCGC AAGCATCACG
CTGCACGAAG CGTCCGGCGC AACGCATCGC CTGGTCGACT ACGCCTATGA CGGCCCGATG
CTGGCGCGGG TGTCGAGCTT CCAGCACGGC ACGTTCCATT ACACCTACGA CCATCGCGGC
TGGATCACCG GCTGGCGCGA CACCGACCAG ACCGACGTGC GCTACCGCTA CGACGAAGCG
GGCCGCGTGG TCGAGACCGG CACCCGCGAG GGCTATCACA CCGGTCACCT CGTCTACGAA
GACGGCCGCA CCCGGGTGCT CGACGCCGAC GGTGAATGGC TCTACGAACA CAACGCCGAA
GGCCTCGTCA CGCGCGAGAC CGATCCGCTG GGCAACAGCA CGCAGCGCGA ATGGCAGCTC
GGTCGCTTGA CTTCGGAGAC CGATCCGCTG GGCCGGCGCA CCGACTTCAG CCACGACGCG
CAGGGCAAGC TGACCGGCGT GCGCGAGCCC TCCGGCGCGG TCACGCAATT CCAGTACGAC
TCGCAGCGCC GGCTGGCCGC GATGGCGCTG CCGACCGGCG ACCGCGTGGC GCTGGAGTAC
GACAAGCAGC ACCGCCTGAT CGCCCGTACC GAACCGGACG GCACCGTCAA GCGCTACCGC
TACGGTGAGC GCGGCGAGCT CCTGCGCATG GTGGACGGCG AGCGCGAAAC CCGCCTCGAC
TACGACGACC AGCTCCGCCT CGTGGTCACG CGCCTGCCGT CCGGCGCCAG GCTCGGCACG
CGCTTCGACG TGCTCGGGCG CCTGCTGGAA GACACCGACC CGGACGGCAA CGCCACCCGC
TACGACCACG CCAGCGGCCC GCACAACCCG CGCGGCAACG TCGCCCAGAA AACGCTCGCC
GATGGCACGG CGCACCGCAC GGTCTACAAC AGCGAAGGAC TGCCCATCGA GCAGACCGAC
CCGCTCGGCC GCACCACGCG CACCACCTAC GGCCCGTTCG ACCTCGTCAC CGGCACCATC
GACGCTGCCG GCCACGCGAC GCGCTTCGAG TACGACCACG CCACGCGGCT GACCCGCATC
GTCAATGCCC TGGGCGAGGC CTGGACCTAC CGCTACGACG CCGCCGGCCG CCTCGCCGCC
GAGACCGACT GGGGCGGACG CACCACCGGC TACACGCGCG ATGCCGCCGG CCGCCTGCTG
ACCAAAACGT TGCCCGATGG CGGCGCCTGG CACTACCGCT ACGACCTCGC CGACCGCCTC
GTCGCGGTGG ACGCCGGCGA CGTCACGCTG ACCTACCGCT ACGACGCCGC CGGCCGCCTG
ACCGCCGCGG CGGTGCACCA CGATGCGGCC ACCCACGTCA CGCGCTTCCG CTACGACGGC
AACGGCCGCG TGATCGAAGA AGACCAGCAC GGCCAACTGC TCAAGCACAT CTACGACGCC
CAGGGCCAGC GCACCCTGCG CAAGACGCCG CACCGCGAAA CCCGCTACGG GTACGACGCG
CTGGGCGCGC TGACGCAGGT CGGCGGACTG AGCATCACGC GCGACGGGCT GGGCCGCGAA
ACCGGACGCC AGGCCGGCGA CTTCATCGCA CAGCGCCAGT ACGACGCCCT CGGCCGCCTG
CTGCGCCAGG CCGCCGGCCC GCGCGCCGCG TTCGAGGCCA TGCAGACGGA CCCGGTGCAA
GCGCTCCAGT GGCTGACCCG CCAGAGCTAC CGCTACGACG CCGCCGGCCA GCTCGCACAG
GTCGAGACGG ACACCGACCG CTTCACCTAC CAGCACGACC CGCGCGGGCA GGTCACCTCG
GTCAGCAGCA TCCGCCAGCC GGCCGAGCAC TACACCTACA ACGCGGCGCA GAACATCGCC
GCCCACGGCC GACAGGGCCC GATCGACGGC CGCCACTACC TGCCCGGCGG CCTGCCCGAG
CGCGTCGGCC ACACGCGCTA CCGCTACGAC GCCCGCGGCC GCACCATCGA AAAGACCATC
GAACAGCCCG GCTTCCGCCC GAAGACGTGG CGCTACGAAT GGGATGGCCT GAACCGGCTG
GTGAAGGTGC ACACGCCGGA CAAGGGCTCC TGGGCGTACC GCTACGACGC GTTCAACCGG
CGCGTGGAGA AGGTCAACAC GGGCACCGGG GCGTCGGTGC GGTTCGTGTG GGATGGCTAT
ACGGTGGCGG AGCGGTGGGG GCAGAAGCGG GACGGTTCAA CGGGCACCGC CACGACATGG
CACTTCGAGC CGGACAGCCA CACGCCGCTC GCGCAGGAGA CCGACGCGCA GCACTACGCC
GTGTTCTGCA ACCCCACCGG CCTGCCGCTG GAAATCTATC GCGCCACCGG CGAGAAGGTC
TGGGCGTCCC GATACAACCT CTGGGGGCAG GCGCTGTCGG AAGACACGCC GCCGGGCGAC
GAGGCGCTGG ATACCAGCCT GCGCTTTGCC GGCCAATGGG CGGATGAAGA ATCCGGCCTG
CACTACAACC TGAATCGCTA CTACGATCCG GACAGCGGCT GTTACCTCAG CATCGATCCG
ATCGCGATCC GGGGTGGGCA CCGGACGCAG GGGTATGTGC AGAATCCTTT GTGGGAGGTG
GATCCGCTGG GGTTGGCGGT GTGTGAGAAG CGGTATGCGC GTTACAAGGA GCTTCGAAAT
GAAGGAATGT CGCCTGCGGA GGCGGCTAGG CTGTCGAGGG AAGGGGCTTT GCCTGGCGTG
CCGGGAAGTC AAGGGGGAAC CGCTGCAGGC GGCCGCAAGT TCGGACCGAA ATCAGGGGAA
TCTGAACCCA ACTGGGGGGA TCTGGTCAGG AAGTATGAGG GTGACCCTCC CGCCGATATG
ACCAACCCAC ACGGGCACCA CGCGGTGTTC AAGAAGGGGC GCGGTACCAA GATGAGAGAA
TATTTGGATG AGAGTAAAGA TATCTTAGAA AACTACGATA TCGATTGGTA CAAGGGGCGT
GAGAATTTAG GGTGGGCTCC AAACAAGAAT CATAGTACAG CTGCCGCTAA AGCGGTTCGA
GATGCGCTGA AGGATGCCCA TGAAAATATT GGTACAAAGG AAGCAGTCGT TGAGGCGTTG
TCAAAAATAA AGAAGCATTT TAGAGACGAC ACGATCGGTA CGATTTTTGA ATAA
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| Protein sequence | MADHDPSTQP PAEPSGSAEA RLAALQTLEN GEATKQSQMK WVDGANYGML GADVGYGVYA
AGSAAMGAGA TGAAAAGAAA VAAVPAVVAL GGSWLLGKMG VTGKLEEGFE WVGDKLGLTI
GRGDPHPACV GDDIAHSSGF WGMVAGLAVG VAIGAMVAAT VATGGLAGAL LVGACMAGGL
SIGGALAGAS QNMGSNCGKI ATGSGNVTFE GKAAARVTDL IACTKHPGPE PLVEGSLTIT
INGLPSVRIG HASHCSGKVN SGRKSIWIDK TTGQFGPKNP ELTAGEEFLA GLLGGLVGAK
IGGAVGRGRR EPTESAERQG VKDETTTPCK DPIDVATGEM VDFRDDLAIP GVLPLTLTRR
YRTRSDDAGL LGPKWSVNWS QHLRLDDGHL VRFNDGGGLI ITFEAPDAEL NGINLREPRY
RLEGTRAAPR ILDDDTRRVL VFSPLADGAV ARLERIEDHS GNAIAFDYDE HGRLIALRHT
SGYRLALAYP GGAHTVASIT LHEASGATHR LVDYAYDGPM LARVSSFQHG TFHYTYDHRG
WITGWRDTDQ TDVRYRYDEA GRVVETGTRE GYHTGHLVYE DGRTRVLDAD GEWLYEHNAE
GLVTRETDPL GNSTQREWQL GRLTSETDPL GRRTDFSHDA QGKLTGVREP SGAVTQFQYD
SQRRLAAMAL PTGDRVALEY DKQHRLIART EPDGTVKRYR YGERGELLRM VDGERETRLD
YDDQLRLVVT RLPSGARLGT RFDVLGRLLE DTDPDGNATR YDHASGPHNP RGNVAQKTLA
DGTAHRTVYN SEGLPIEQTD PLGRTTRTTY GPFDLVTGTI DAAGHATRFE YDHATRLTRI
VNALGEAWTY RYDAAGRLAA ETDWGGRTTG YTRDAAGRLL TKTLPDGGAW HYRYDLADRL
VAVDAGDVTL TYRYDAAGRL TAAAVHHDAA THVTRFRYDG NGRVIEEDQH GQLLKHIYDA
QGQRTLRKTP HRETRYGYDA LGALTQVGGL SITRDGLGRE TGRQAGDFIA QRQYDALGRL
LRQAAGPRAA FEAMQTDPVQ ALQWLTRQSY RYDAAGQLAQ VETDTDRFTY QHDPRGQVTS
VSSIRQPAEH YTYNAAQNIA AHGRQGPIDG RHYLPGGLPE RVGHTRYRYD ARGRTIEKTI
EQPGFRPKTW RYEWDGLNRL VKVHTPDKGS WAYRYDAFNR RVEKVNTGTG ASVRFVWDGY
TVAERWGQKR DGSTGTATTW HFEPDSHTPL AQETDAQHYA VFCNPTGLPL EIYRATGEKV
WASRYNLWGQ ALSEDTPPGD EALDTSLRFA GQWADEESGL HYNLNRYYDP DSGCYLSIDP
IAIRGGHRTQ GYVQNPLWEV DPLGLAVCEK RYARYKELRN EGMSPAEAAR LSREGALPGV
PGSQGGTAAG GRKFGPKSGE SEPNWGDLVR KYEGDPPADM TNPHGHHAVF KKGRGTKMRE
YLDESKDILE NYDIDWYKGR ENLGWAPNKN HSTAAAKAVR DALKDAHENI GTKEAVVEAL
SKIKKHFRDD TIGTIFE
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