| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05337 |
|---|
| Symbol | RSp1292 |
|---|
| ID | 1223604 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1642272 |
|---|
| End bp | 1642817 |
|---|
| Gene Length | 546 bp |
|---|
| Protein Length | 181 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637241155 |
|---|
| Product | putative type-4 fimbrial pilin related signal peptide protein |
|---|
| Protein accession | NP_522851 |
|---|
| Protein GI | 17549511 |
|---|
| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG4970] Tfp pilus assembly protein FimT |
|---|
| TIGRFAM ID | [TIGR02532] prepilin-type N-terminal cleavage/methylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 22 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 0.693608 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGCGGCAT CCGGCCGCGC GCGCGGCTTC ACGCTGGTGG AGATGGTGAT CGTGATCTCG
ATCGTCGCCA TCCTCGTCAT GTTCGCGGCG CCGTCCTTCC AGTCGACCAT CCAGAGCGCC
CGCACGACGA CCGAAGTCAA CTCGCTCGTC AACGACCTGC AGTTCGCGCG CAGCGAGGCC
ATCAAGCGGG GGCAGCCCGT CAGCCTTTGC GTGTCGTCGG ATGGCGCGAC CTGCCTCGGC
AGCAACAAGT GGCAGGCCGG CTGGATTGTC TTCAACGACG TGAACGGCTC GGGGGCGATC
GATTCGAGCA CCGACGTCGT GCTGCGCAGG CGCGCCACCT TTGCCGGCAG CGACACCTTT
GTCGCCAGCC CCACCACGAC CGTGCTCACC TACAACCGCG AGGGCTTCGC GACGGGGCTC
ACCAACGGCA CGGTCACGCT GGTGCTGCAC ACCGCGCCGG TCAACCAGCA GGCCACGCGC
TGCGTCGCCA TCAACGTGGT CGGCCGCCAG GTCGTTCAAA GCGCGGGGAC CGGCTCATGC
GCATGA
|
|---|
| Protein sequence | MAASGRARGF TLVEMVIVIS IVAILVMFAA PSFQSTIQSA RTTTEVNSLV NDLQFARSEA
IKRGQPVSLC VSSDGATCLG SNKWQAGWIV FNDVNGSGAI DSSTDVVLRR RATFAGSDTF
VASPTTTVLT YNREGFATGL TNGTVTLVLH TAPVNQQATR CVAINVVGRQ VVQSAGTGSC
A
|
|---|
| |