| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05333 |
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| Symbol | RSp1288 |
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| ID | 1223600 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1637074 |
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| End bp | 1640409 |
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| Gene Length | 3336 bp |
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| Protein Length | 1111 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637241151 |
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| Product | putative type-4 fimbrial biogenesis pily1-related protein |
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| Protein accession | NP_522847 |
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| Protein GI | 17549507 |
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| COG category | [N] Cell motility
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG3419] Tfp pilus assembly protein, tip-associated adhesin PilY1 |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.476781 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGAACA AGAAGCAATG GACTTTCCTG CTGGCGGTGG CCGCCGCGTT GCCGGGCGTC
TCGCGGGCCC AGCTCGTCAT CAGTGACACG CTGACCGGCG CGTCCTCCTC GTACGACTGG
AAGGCGCTGA ACGGCGCCTG CCTGACGGCG GGCAACAATA CCGGCTCGAT TCCCGCGTGC
TCCGGGCTGA GCTACTACAG CGGCAAGACC CTGGTCGGCG GCGCCACCGG CACCTTGCCC
GATGCGGTGG GCTCGGGCGC CTTGCGCCTG ACCAACGGCG ATACCTCGAC CAGCGGCTCC
AACGGGACGT ATCAGACCGG TGCCGTGGTG TCGAACTTCA CGTTCCCGAG CACCCAGGGC
CTGCAGGTCA CGTTCACGAC CGTGACCTAC GGCGGCAACA ATTACAGCGG CACCGGCGCG
GACGGCATCA GCTTCTTCCT GGCCGACGGC TCGAAGTCGG CGACGGTCGG GGCGCTGGGC
GGGAGCCTCG GGTACAGCTG CTCGAACGTG AACAGCACGT ACGACGGCGT GCTGGGCGGC
TATATCGGGC TGGGCATCGA CGAATTCGGC AACTTCTCCA ACAGCAGCGA CAACACCAGT
TCCGGTACCG GCTTCAAGGC CAGCCGGATC AGCCTGCGCG GTGCCGGCAG CACCAACTGG
TCCTATCTGA ATGCGACCTA TCCCAGCTAC TACCCGTCTT CGCTGAGCGC TTCGCAGCAG
GCCACGGCGG TCAAGAAGAC CTGTTCGACC GGCTACCTCT ACGACTTCAG CCAGGGGAGC
TGGAGCCCGA CCAAGAAATC GGCGCTGACC TACAACTACA ATTACATCAC CGGCGATGAC
CTGTCGTTCA CGATCGCGAA CCAGGAAGCC GTCTCGAAGC CGCTGCGCGG CTCCGCCGTG
CCCATCACGT ATGGCCTGAC GATCACGCAG GACGGCCTGC TGAGCCTGTC GTACAGCATC
AACGGCGGCA CGGCGCAGCC GGTGATCACC AGCCAGAGCA TCACGTCGTC CAACGGCGCG
TTGCCCGCGT CGTTCCGGTT CGGCTTCTCC GCGGGCACGG GCGGCGGCAG CAACGTGCAC
GAGATCACCT GCTTCAAGGC CGCGCCCGTC GAGCAGTCGA GCAGCTCGGC CGGCGCCAAC
GTGCAGCAGT CGGCCCGGGT CGAGGCCGGC ACGCAGCTGT ACCTGGCCTA CTACCACCCG
AGCAACTGGT GGGGCGAGCT GACCGCGCAA AGCCTGCTGG TGGACTCGAC CACCGGCACC
GTGTCGATTG CCTCGACGGC GAACTGGGAT GCCAGCTGCA CGCTGACGGG CGGCTCCTGC
CAAGCGATGG GCAGTTCGGC CACGGTCACG GCCACCAGCC CCGCGTCGCG CAAGATCCTG
ACCTGGAATG GCTCCGCCGG CATTCCTTTC GAGTGGAGCA ACCTGAGCTC GACGCAGCAG
TCGTCGCTGA CGTCCGGCGA CAGCACCGTC AACAGCAACC GGCTGCTGTA CCTGCGCGGC
GACCGCACCC AGGAAGCGAG CAGCAGCGGC CCCTACCGCA CGCGCACCGG CGTGCTGGGC
GACATCATCA ACTCGAGCCC GACCTGGGTC GGCGCGCCAT CCTCGTCGTA CAACGGCCCG
TGGGTCGACG CGCTGAACGG CTCGGCTTCG CCGGCGGAGC CGACGGGCAG CTATGCCACC
TTCAAGAGCA CCTACGCCAC GCGCCAGAAC GTCGTCTATG TGGGCGCCAA CGACGGCATG
GTGCACGGAT TCCGCGCGGG CGCGTACGAC TCGAGCGGCA ACTTCGTGAG CACCACCGCC
ACGCCCAACG ATGGCGTGGA GGCGCTGGCC TACATGCCGG CAGCGGTGCT GAGCACGATC
CACAGCACCA CCGGCAAGGT CGACTTCAGC TCGCCGTCGT ACTCGCACAA CCTGTACGTC
GACGCCACGC CCGGCACCGG GGATCTGTAC TACAACGGCG CCTGGCACAC CTGGCTCGTC
GGCGGCCTCG GTGGCGGCGG CAATGCCGCC GGCACCATCG CGGACAGCAC GACTTCGGCC
AGCGGCACGA TCTACGCGCT GGACATCACC GATCCGACCC AGTTCAGCGA AGGCAACGCC
GGCTCGCTGG TGATCGGCGA GTGGTCGTCT TCTAGCCTGA CCTGCGCCAA CGTCACCAAT
TGCGGCCAGT ACCTGGGCAA TACCTACGGC ACCCCGGTCA TTCGTCGCCT GCACAACGGG
ATGTGGGCGG TCCTGTTCGG CAATGGCTAC AACAGCAAAA ACGGTACGGC CGGCCTGTTC
GTGATGCTGG TGGACCCCAG CAGCGGCGCG AAGACGTTCT ACTATTTCGA CACCGGCTAC
GGCGCGGCCA AGGACCCGAC GGGCAAGGGC GGCAAGAACG GCATCGCCTA TGTCACGCCG
GCCGACCTGG ACGGCGATCA CATCACCGAT TACGTCTATG CCGGCGATCT GTTCGGCAAC
GTCTGGCGCT TTGACCTGAC GGCGGCCACC GCGTCTTCGT GGTCGGTGGC CTCGTCGCCG
CTGTTCTCGA CCACGGCCGG CCAGCCGATC TCGTCCAAGG TGGTGGTGGC GTCCGTTCCG
GACACCGCGG GCGGGAACCC GCGCGTTGTG GTCGCCTTCG GCACGGGCCT GAGCCTGCCC
GCCACGCTGA CCAGCGCGGC GGCGTATGCG ACGTCCAGCC AGGCCCTCTA CGGCGTCTGG
GACTGGAACA TGAGCGCCTG GAACGCGAAG GCGGCGGCAA CGTCGCAGTA CAGCTCGCTG
GCCGCGCCGC AGACCGTGAC CGTATCGTCG CTGCAGACGC AGACCATCAC CTCGCAGTCC
ACCGCCAGCG GCTCGACGGC GTCGTACCGG ACCGTCAGCA CGAACAAGGT CTGCTGGCAG
GGGTCGAGCG TCTGCTCCAG CGGCAACAAC CAATACGGCT GGAAGCTGGT GCTGCCGAGC
ACGACGTCGG GCTCCACCAC CAACTACGAG CAGGTCATCT ATAACCCGAC GCTGGCGTAC
GGCATGTTCG TCGTGAACAC CACCATTCCG GCGGTGACGC AGATCCTGTC CTGCAGCACC
ACGCAGGCCT CGGGCTACAC CATGGCGATC ACGATCGGCG CCGGCGGCGC GGGGTCATCC
TCGTTCTTCG GGGACAGCAA CGGCAACTTC TCCACCTACA ACGGCGGCAT CGTGAGCGGC
ATCGGCCTGA GCGGCACGGG CACGCCCTCG TTCGTCACGA CGGACAGCGG GGTGACCATG
GTGCAGCAGA CCAGCGACGG CAAGGGTTCT GCGACCGCGG TCAACCCCGG CGCCTCGGCG
ACCGGCTCGC GTGTCAATTG GGTCAAGCTG CGCTAA
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| Protein sequence | MMNKKQWTFL LAVAAALPGV SRAQLVISDT LTGASSSYDW KALNGACLTA GNNTGSIPAC
SGLSYYSGKT LVGGATGTLP DAVGSGALRL TNGDTSTSGS NGTYQTGAVV SNFTFPSTQG
LQVTFTTVTY GGNNYSGTGA DGISFFLADG SKSATVGALG GSLGYSCSNV NSTYDGVLGG
YIGLGIDEFG NFSNSSDNTS SGTGFKASRI SLRGAGSTNW SYLNATYPSY YPSSLSASQQ
ATAVKKTCST GYLYDFSQGS WSPTKKSALT YNYNYITGDD LSFTIANQEA VSKPLRGSAV
PITYGLTITQ DGLLSLSYSI NGGTAQPVIT SQSITSSNGA LPASFRFGFS AGTGGGSNVH
EITCFKAAPV EQSSSSAGAN VQQSARVEAG TQLYLAYYHP SNWWGELTAQ SLLVDSTTGT
VSIASTANWD ASCTLTGGSC QAMGSSATVT ATSPASRKIL TWNGSAGIPF EWSNLSSTQQ
SSLTSGDSTV NSNRLLYLRG DRTQEASSSG PYRTRTGVLG DIINSSPTWV GAPSSSYNGP
WVDALNGSAS PAEPTGSYAT FKSTYATRQN VVYVGANDGM VHGFRAGAYD SSGNFVSTTA
TPNDGVEALA YMPAAVLSTI HSTTGKVDFS SPSYSHNLYV DATPGTGDLY YNGAWHTWLV
GGLGGGGNAA GTIADSTTSA SGTIYALDIT DPTQFSEGNA GSLVIGEWSS SSLTCANVTN
CGQYLGNTYG TPVIRRLHNG MWAVLFGNGY NSKNGTAGLF VMLVDPSSGA KTFYYFDTGY
GAAKDPTGKG GKNGIAYVTP ADLDGDHITD YVYAGDLFGN VWRFDLTAAT ASSWSVASSP
LFSTTAGQPI SSKVVVASVP DTAGGNPRVV VAFGTGLSLP ATLTSAAAYA TSSQALYGVW
DWNMSAWNAK AAATSQYSSL AAPQTVTVSS LQTQTITSQS TASGSTASYR TVSTNKVCWQ
GSSVCSSGNN QYGWKLVLPS TTSGSTTNYE QVIYNPTLAY GMFVVNTTIP AVTQILSCST
TQASGYTMAI TIGAGGAGSS SFFGDSNGNF STYNGGIVSG IGLSGTGTPS FVTTDSGVTM
VQQTSDGKGS ATAVNPGASA TGSRVNWVKL R
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