| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05182 |
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| Symbol | RSp0241 |
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| ID | 1222372 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 308986 |
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| End bp | 312591 |
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| Gene Length | 3606 bp |
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| Protein Length | 1201 aa |
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| Translation table | 11 |
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| GC content | 74% |
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| IMG OID | 637240100 |
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| Product | putative alpha-amylase-related protein |
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| Protein accession | NP_521802 |
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| Protein GI | 17548462 |
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| COG category | [G] Carbohydrate transport and metabolism |
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| COG ID | [COG0366] Glycosidases |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 2 |
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| Plasmid unclonability p-value | 0.00237217 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 11 |
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| Fosmid unclonability p-value | 0.176867 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACCGATC CGAAGACGTT CGCGGCACCC GCCTCCCGCA CCCCGCCCGC CACGCCGCCC
CGCGCGGCGG AAGACACGCA GCAGCCGGCC GCCGCGCAAA CGCCCACGCA AGCACCTCCC
GCGGCAACCC CGCACGCCCG GCCCGAGGCG CAGTGGAGCG CGGCGGCATT CACGCCGGCG
ATCTGCTATC TCCATCCCTT GCAGCAGGGT CCGCTCGACC AGTGGGGCGG TCTGCTGGAC
CGCATCGCCG CGCTCGGCTT CGACCATGTG CTGATCGCGC CGCCGTTTGC GGTGGGCGCG
GGCGGCAACG TGTTCGTCAC GCGCGACCAC GCGCGGCTGC ATGCCGCGCT CGGCGGCGGA
CCCGCACATG CGGCGCTGGG CCGGCTGGCC GACGCTTGCC GGCAGCGCGG CCTGACCCTG
CTGATGGACC TGGTGATCGA CCGCGTGGCG ACCGACGCCC CGCTGCGCGC CGACCACCCC
GGCTGGTTCC ACTGCCGCGC CGAGCACGGC GACGCGCTGG ACCCGCGCCT GCCGCCGTCG
CACCTGGAGG TGGCCTCGTT CCGCCACGAC GACGCGCATT GCGCCGAGGC CATCGGCGCG
TGGTGGATGC AGCAACTGCG CGCGTGGACG GCGCTCGGCA TCGGCGGCTT CCGCTGCGAG
GCGCCGGCCC GCCTGCCGGC GGCGCGCTGG CACCCGCTGA TCGCGGCCAC GCGCGAGGGC
GCCGGCGCGC GGCCGGTGCG CTTCCTGGCC TGGACGCCGG GCCTGGACGG CCGGGCCGTC
GAGGCCCTGG CCGACGCCGG CTTCGATGCC ACCTTCTCGT CGCTGCGCTG GTGGGATTTC
CGCGCCGGCT GGATGGTGGA GGAACACGCG CGGCTGGCCG CCGTCGCGCC GCCCATCGCC
ACGGTGGAGG CGCCGTTCGG CACGCGCTAC GGCCAGGCCT TCGGCGATGC CATGACGCGC
GAGCGGGCCT ACCGGCGCAT GCTCGACGTG GCGGACGTGC TGGGTGCCGG CTGGCTGATG
CCGTTCGGCT TCGAGCGCGG CGCGCTGCTG CCGATGCTGC CCGATCGCGG CGACCCGACC
GACGCGCAGT GGATCGACGC GCATGCGGCC TTCGACCTGT CCGACGCGGT GCGCGACGTG
AACGCGACGC TGCGTGCCGC GCAGGCCGCC GGCACGGTGG CTGCGCGCGC GGACCTGCGC
ATGCTGACCG GCCCCGACGC ACGCATGAGC GCCCTGCTGC GCGCCGACGG CCCCGACCTG
CGGGCGGACG ATGCGGCGAC GCTGCTGGTC ATCAACCCCG ACCTGCACAC CGGCGTCGCG
GCGCAGGCGG ACCGCTTCCT GCCCGGCGTG GCGGGCGGCT TCACGCGCGG CGTGGCGCTC
GACCTGCTGA CCGAGCCGGC CGGCAGCCGC GACGAGGCCC TGCGCGCCAA GGCGCGCGCG
CTGGCGGAGA TCGACCTGCC GCCGGGCGGC GTGCAGGCCT GGCGCGTGTT CCGCAGCCGT
CCGGTCCGGT GGCGCCCCAT CGTGGCGCCC GGCGGGCAGC GGGCAATCCC GGGCGATGCA
GACAGCGGGC GCGCCGGCAC CGCCGTGGCC GCGCCGCGCA TCGCCATCGA ACACGTGGCC
CCTGCCGTGG ACGACGGCCG CTTTGCCGTG AAGCGGCTGG TGGGCGACGA CATCGTCGTC
GAAGCCGACG TGCTGATGGA CGGGCACGAC CAGCTGGCTG TAGAACTGCA GTGGCGCGCG
GACGATGACG ACGCCTGGCA GCGCGTGCCG ATGGTGCCGC TGGGCAACGA CCGCTGGCGC
GGCGCCTTCC GGCCCGAACG GCTGGGGCGG CATGCCTATG CCGTGGCCGC CTGGCGCGAT
GCCTTCGGCA CCTTCCGCGC CGAGCTGGAG ACGAAGCACG CAGCCGGCGT GGAGGTGGCC
GTCGAGCTGG AAGAAGGCGC GCAGCTGGTG GCGCATGCGG CCGACCACGC GCCCAAGGAC
GCCCCGGTGG GCGCACTGCA CCAGTTGGCG GACCTGCTCC GGGCCACCGC CCCGGACCCC
GCGCACCGGC TCAAGCTGCT GCTGGACCCG GCCACCGCGC ACGTGATGGC GCAGGCCTCG
CACTTCCGGC CGTTCCATGT GCGCAGCGCA CCGTATCCGC TCGACGTGGA GCGCAGCGGC
GCCGCGTTCG CCAGCTGGTA CGAGCTGTTC CCGCGCTCGG CCAGCGGCGA CGCGCAGCGG
CACGGCACCT TCCGCGACGT GGCGCGCCGG CTGGGGGTGA TCCGCGCGAT GGGCTTCGAC
GTGCTGTACT TCCCGCCCAT CCACCCCATC GGGCGCACCC ACCGCAAGGG GCGCAACAAC
AGCCTGCGCG CCGAGCCCGA CGACCCGGGC AGCCCCTACG CGATCGGCGC GGCGGAAGGC
GGGCACGATG CCATCCACCC GCAGCTCGGC ACGCTGGACG ATTTCCGCCG GCTGCGCGAT
GCCGCCCGCG GGCAGGGGCT GGAGTTGGCG CTCGACTTCG CCATCCAGTG CTCGCCCGAC
CACCCCTGGC TGCGCGCGCA CCCGGGCTGG TTCGCCTGGC GCCCCGACGG CAGCGTCCGG
TACGCCGAGA ACCCGCCCAA GAAATACGAA GACATCGTCA ACGTCGATTT CTACGCCGCG
AGCGCCAAGC CCGCGCTGTG GCTCGCGCTG CGCGACGTGG TGATGTTCTG GGCCGACGAG
GGCGTGCGGC TGTTCCGCGT CGACAATCCG CACACCAAGC CGCTGCCGTT CTGGGAATGG
ATGATCGGCG AGGTGCGCGC GCGCTACCCC GATGCGATCT TCCTGTCGGA GGCGTTCACG
CGGCCCAAGG TGATGTACCG GCTGGCCAAG GTGGGCTTCT CGCAGTCGTA CACCTACTTC
ACGTGGCGCC ACGGCAAGCA GGAATTCATC GACTACCTGA CCGAGCTGAC CCGCACGCCG
GTGCGCGAGT ATTTCCGGCC GCACTTCTTC GTCAACACGC CCGACATCAA TCCGGTGTTC
CTGCAGACCT CGGGGCGGCC GGGCTTTCTG ATCCGCGCGG CGCTGGCGGC CACGCTCTCC
GGGCTGTGGG GCGTCTATAA CGGATTCGAG CTGTGCGAGG GGCAGGCGCT GCCCGGCAAG
GAGGAATACC TGGACGCCGA AAAGTACCAG CTGCGCGCGT GGGACCACGA CCGGCCGGGC
AACATCGTCG CCGAGATCGC GCTGCTCAAC CGCATCCGCC GCGCCAATCC GGCGCTGCAT
TCGCACCTGG GCGTGCAGTT CCAGCCGGCC TCGGGCGAGG GCATCCTGTA CTTCAGCAAA
TCGACGCCGG CGCCGCTGCC GACCCACCCG GCCGAACTCG CCGATGCCGC GCCGGAGCGC
TTCGGCGACA ACACGCTGCT GGTCGCCATC AGCCTCGACC CGCATCACCC GCAGGAGGCC
GACATCGAGC TGCCGCTGTG GCAGTGGGGC CTGCCCGACC ACGGCGCGCT GATGGCGGAG
AACCTCGTCG ACGGCGCGCG CTTCGTGTGG CGCGGCAAGC GGCAGCACGT GCGGCTGGCG
CCCGAGCAAC CGTTCGCGAT CTGGCGCGTA CGACCCGCGC TGCCTTCGGA GGAGCAACCG
TCATGA
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| Protein sequence | MTDPKTFAAP ASRTPPATPP RAAEDTQQPA AAQTPTQAPP AATPHARPEA QWSAAAFTPA
ICYLHPLQQG PLDQWGGLLD RIAALGFDHV LIAPPFAVGA GGNVFVTRDH ARLHAALGGG
PAHAALGRLA DACRQRGLTL LMDLVIDRVA TDAPLRADHP GWFHCRAEHG DALDPRLPPS
HLEVASFRHD DAHCAEAIGA WWMQQLRAWT ALGIGGFRCE APARLPAARW HPLIAATREG
AGARPVRFLA WTPGLDGRAV EALADAGFDA TFSSLRWWDF RAGWMVEEHA RLAAVAPPIA
TVEAPFGTRY GQAFGDAMTR ERAYRRMLDV ADVLGAGWLM PFGFERGALL PMLPDRGDPT
DAQWIDAHAA FDLSDAVRDV NATLRAAQAA GTVAARADLR MLTGPDARMS ALLRADGPDL
RADDAATLLV INPDLHTGVA AQADRFLPGV AGGFTRGVAL DLLTEPAGSR DEALRAKARA
LAEIDLPPGG VQAWRVFRSR PVRWRPIVAP GGQRAIPGDA DSGRAGTAVA APRIAIEHVA
PAVDDGRFAV KRLVGDDIVV EADVLMDGHD QLAVELQWRA DDDDAWQRVP MVPLGNDRWR
GAFRPERLGR HAYAVAAWRD AFGTFRAELE TKHAAGVEVA VELEEGAQLV AHAADHAPKD
APVGALHQLA DLLRATAPDP AHRLKLLLDP ATAHVMAQAS HFRPFHVRSA PYPLDVERSG
AAFASWYELF PRSASGDAQR HGTFRDVARR LGVIRAMGFD VLYFPPIHPI GRTHRKGRNN
SLRAEPDDPG SPYAIGAAEG GHDAIHPQLG TLDDFRRLRD AARGQGLELA LDFAIQCSPD
HPWLRAHPGW FAWRPDGSVR YAENPPKKYE DIVNVDFYAA SAKPALWLAL RDVVMFWADE
GVRLFRVDNP HTKPLPFWEW MIGEVRARYP DAIFLSEAFT RPKVMYRLAK VGFSQSYTYF
TWRHGKQEFI DYLTELTRTP VREYFRPHFF VNTPDINPVF LQTSGRPGFL IRAALAATLS
GLWGVYNGFE LCEGQALPGK EEYLDAEKYQ LRAWDHDRPG NIVAEIALLN RIRRANPALH
SHLGVQFQPA SGEGILYFSK STPAPLPTHP AELADAAPER FGDNTLLVAI SLDPHHPQEA
DIELPLWQWG LPDHGALMAE NLVDGARFVW RGKRQHVRLA PEQPFAIWRV RPALPSEEQP
S
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