| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS05071 |
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| Symbol | RSp1181 |
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| ID | 1223493 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1500811 |
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| End bp | 1502262 |
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| Gene Length | 1452 bp |
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| Protein Length | 483 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637241046 |
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| Product | putative outer membrane efflux transmembrane protein |
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| Protein accession | NP_522742 |
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| Protein GI | 17549402 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 0.485043 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 0.627641 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | TTGCTGATGA CATCCAGATG CATTGCCCGC CTGAGAGGCA ACCGGCCGCG TGCACGCCGC
GCGGCCAACG CAGTTCCGTT CCATGACCGG TTGTGCCTGA CGCTCGCGCT CCTGGCCGCG
CTGCCTGCCG GCCACGCCGC GCCCGTGCCG CCGGCCGCCG ACATGGCCAG GCCCGCGGCG
GCCAGCACGA GCAGCCCGGA CATCACACAA AGCGCCGATG GCGCGACCTT CCGGGTAGCC
ATCGACAACC TGTCGCTGCG CAACGCCGTC GGCGTCGCGA TCGCGCGCCA TCCCGACATC
AGCCGCGCCA ACGCCGAGGT CGCGCAGCGC TCGGCGGAAG TCGAGGTCGC GCAAGCCGCC
TGGTACCCGA AGATCGAATA CGGTGTCCGG CCCGGATACG GCGGCAGCTT CGGCAGCAGC
GGCAACAGTA CCGGCGCGCG CGCCTCGGTG GGCGTCAACC AGCTGGTCTA CGACTTCGGG
CGGACCGCGA GCCGCATTGC CGCGGCCGAC GCAACGCTGA ACCAGAAGCA GTACCAGCTC
GCCGACACGG TCGAGACCGT GGCCTACAAC ACGGCCGCCA CCTTCGTCGA ACTGGCGGCG
AGCCAGGACG TGATCGCCGC GGCGCGGCGC CAGGTCGCGG CGCTGCGCGA GACGCGCGTG
AAGATCGTGG ACCGCGTGCG GGCGGGCCTG TCGGTCTCGT CCGACCGCAA TCTCGCCGAC
CTCGCCATCC TGCGCGCCGA GGCCGAGGTG CTGAAAGCCA ACACGCGCTT CGACGTCGCC
GCCGCCAAGC TCACGGAGCT GATCGGCGCG CGCCCGCAGC GCGTGGCCGA CCTTGCCGGA
ACCGTCGGCT TCGTCCGCGG CCTGGGCGAC AGCGGCGAGG ACATCGAGCA CACCCCGTCG
GTGCTGGCCG CCGGCGCCGC CGTGCAAGCC GCCGATGCCC GCGTCGGCTT CGCCGAGGCC
GAGCGCTTCC CGTCGCTCGG CATCGGTGTC AGCCGCGCCG TCTCGACCGG CCGCGCCAAC
GCCAGCAACG ACACGTGGAT CGGCCTGTCG CTGAGCGGCA GCTTCTCGTT CGGCAATCTC
AACCGGCACC AGATCGCCGC CGCCCGGGCC GACCTGCGCG CCAGCCGGGA AAGCCTGGAA
AACCATCGCC TGGTGACCCG CAGCGCCCTG CACGCCGCCA GGACCGAAGC CGACGGCGCC
TCGGCGCGCC TGGCGAGCTA CCAGAACGTC ATCACGCTCG CGCGCGCCTC GCGCGATCTC
TACTGGCAGG AATACATGCT CAACAAACGC ACCCTGACCG ACGTCCTCAC CCCGGAACGC
GACATCTTCC AATCCGAGGT CGAGTGGATC AACGCCAACG CCGACGGCGC GCTCGCCCGG
ATCAAGGCCT ACGTCGCGGT CGGCCTCTTC GTGGACCGGC TGCGCGCGCA AGGAGGCGAC
CGCCATGACT GA
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| Protein sequence | MLMTSRCIAR LRGNRPRARR AANAVPFHDR LCLTLALLAA LPAGHAAPVP PAADMARPAA
ASTSSPDITQ SADGATFRVA IDNLSLRNAV GVAIARHPDI SRANAEVAQR SAEVEVAQAA
WYPKIEYGVR PGYGGSFGSS GNSTGARASV GVNQLVYDFG RTASRIAAAD ATLNQKQYQL
ADTVETVAYN TAATFVELAA SQDVIAAARR QVAALRETRV KIVDRVRAGL SVSSDRNLAD
LAILRAEAEV LKANTRFDVA AAKLTELIGA RPQRVADLAG TVGFVRGLGD SGEDIEHTPS
VLAAGAAVQA ADARVGFAEA ERFPSLGIGV SRAVSTGRAN ASNDTWIGLS LSGSFSFGNL
NRHQIAAARA DLRASRESLE NHRLVTRSAL HAARTEADGA SARLASYQNV ITLARASRDL
YWQEYMLNKR TLTDVLTPER DIFQSEVEWI NANADGALAR IKAYVAVGLF VDRLRAQGGD
RHD
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