| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS04687 |
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| Symbol | RSp0175 |
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| ID | 1222578 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 216083 |
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| End bp | 218971 |
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| Gene Length | 2889 bp |
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| Protein Length | 962 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637240034 |
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| Product | putative VGR-related protein |
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| Protein accession | NP_521736 |
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| Protein GI | 17548396 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 19 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGACTTCA AGACGCTGCT GCAGCACCTC TTCGCCCCCG CGCACCGCCT GTACGCGCTG
GAAGGCGAAG GCCCGATCGC GGAACTGGCG GTGGAGGCAT GGCTCGGCCG CGAGGCCTTG
TCCGAGCTGT TCGAATGGCG GGTGGTGGCC GCCAGCGCCA ATGCGCGCTT CGCCCTCGAA
TCGTTCATCG GCCAGCGCGT GACGCTGGTC ACCACGCTGG CCGACGGCAC GCAGGCCCGG
CGCACCGGCC TGATCCGGCA GGCCGAGCAG CTTGGCGCCG ATGGCAGCCT CGCGCGCTAT
CGCCTGACCG TGGTGCCGTG GTTCTGGCTC GCCACCCAAC AGCGGCACAG CCAGGTGTTC
CAGAACCGGC CGCTGGCGGA CATCCTCGAA CAGGTGCTGT CGCCGTATGC GCCCTATGCC
GCATGGCGCT TCGCCGCCGG CGCGGAAGAC CGCATGGCGG CGTTCGGCAC GCGTAGCCAC
ATCGCTCAGT TTCGCGAGAC CGACTACCGC TTCGTCACGC GCCTGCTGGC CGAGGCGGGT
CTGGGCTTCA CCACCGTCGA GGACGAGCAG GCCCCCAGCG GCCACGCGCT GCTGATCTTT
GCCGACAGCC CCCGGCTGGC CGAGGACACG GCATCCGCTG CCGAGGGCGG CATCCGCTAC
CACCGCGCGC ACAGCCAGGA AGAACGCGAC GCCATCCAGG CGTTGATCTG CCATAGCCGC
ACAGCGGTCG GCGGAGTGGC GGTGGCGGCC TGGGATGCGC AGGCCAAGCG GGCCTTCCGC
GCGCACGTTC CCTCTCGGTT TTGCGGTATC GCGGGCAGCC CGGATGCCTA TCTGTCGATC
AGCCCGTCGC TGGCGCCGGA TACGGCCAAC GCGCAGCGCA TCGCCGAGCA GGTGATGGAG
AGCGTCGAAG CGCGCGCTCG CCTGTTCATC GGACGCGGCT CGGTGCGCAC GCTGCGCAGC
GGCACGCGAC TGAAGATCGT GGACTGCCCG CACCTGCCGA AGGACGTGGA CGGCCCGTAT
CCGTTGCTGA TCGACCTGGT GGAGCACTGC GGCATCAACA ACCTGACCGC CGATACGCAG
GCAACATTGG CCCGGAAGCT GGGCGGGCTC GACGCCGCAC TGACCTTCGA CACGCCGCCC
AGCCCCCCCG AATCCGGCCC CGGCCCGTTC GGCTTCATGG CGCCACACGA GGTCATCGAA
CGCTTCACGC CGACGGCGGA CCTGCTCACC GCTGCGCGCG CCCACGGCTA CGCCGGCCAA
TTCCGCGCGG GTGACGCACG CCGGCCGTGG CGACCGGTCG TGTCACACCC CGACACCGGC
CGCCTGTACG CCGAGCCCAC CGCCAGGGGC GTGCAGAGCG CCATCGTGGT CGGCCCGAAC
GGCGAGACCG AGGCCAGTGG CGATGCGGAG CACCACACCA CTCCACGGGG CCAGGTCCGC
GTCCGCTTCC CGTGGCAGCA GGGCGAACGT CCGGATGACC GCAGCACCGG CTGGCTGCTG
GTCGCGCAGC GGCAGGCCGG GGCCGGCATG GGCTGGCAGT GGCTGCCGCG CATCGGCCAG
GAGGTGCTGG TCAAGTTCCA GGAAGACGAC ATCGACCAGC CGGTGGTGAT CGGCGCGCTC
TACAACGGCC AGGGCGAAGC GGGCATTGCG CCGACCCCTG GCGGGCAGGT CGCCAAGGGC
GTCAGGCAGG AAGCCGACCC GGAGACCCTC TACCGTTTGG GCAGCGACAG CGCCGCCAGC
GCGCAGGGCA ATCTCGCCGC CGGCCACAGC CCCGCATGGC ACGGCCTGGG CACCGAGGCC
GAAGGCCACC GCAACGCCGC CGCCCTCAGC GGCTTCAAGA GCGCCGAGCA CGGCGGGCGC
GGCGCCAACC TGCTCGTCTT CGACGACAGC GACGGGCAGT TGCGCACGCA GTTGGCCACC
ACGCAGGCCT ACAGCCAACT GAACCTGGGC CACCTGATCC ACCAGCAGGA CAACCGGCGC
GGCAGCTTCC GGGGCCAGGG CTTCGAGTTG CGCACCGATG GCTATGGCGC GGTGCGCGGC
CAGGCCGGTG TGCTGCTGAC CACTTACCGC GATGCCACGA GCGGCAAGGC TGTGCCGACC
GGCGACAACG CCGCCGGCAT CGCGCTGATC CGGCAGGCCA AACAGCTCAC CGCATCGTTG
AGCCAGGGCG CCACCACGCA TCAGACCGCC GCGCTGTCCA CCGCCAAGGA CGACAGTGCG
CCGCTCGCCA AGCAAGAGAA GGCCGCCTCC GGCATGGTGG ACGGCAAAGC GCTCGACGCC
GCCCAGCAGG ATGCGGCCGC AGGCAACACC GCCACGCAAG GCAAGGTGCC GCATCAAAGC
GAAGCGACGG TGCAGCTGGC CGGCCGCGCG GGGCTGGTGG CGATCGCCGG GCAGGACCTG
CAATTCGCCA ACGGCGAGAG CGTTGTGCTG GCCAGCGGCC AGGACACCAA CGTCGCGGTG
GGCAAGCAGG CGCGCATCCA TGCTGGGCAG GGCATCGGCG TGGCGGCGGG GCTGTCGAAG
GCGGGGGACG ACAACATCGG GCTGCAGCTG ACGGCGGGGC AGGACAACCT CGACGTGCAG
GCCCAGCATG ACGCGCTCGG GCTGCTGTCC AAGGACGACC TGAAGCTGGT GTCGGCGAAT
CTGCATGTGG ACTTCGCGGC GGCCAAGCGG ATCCGGCTGG CGACGGCAGC GGGGGCGTCG
ATCACGCTGG AGGGCGGAAA CATCATCGTC GAGACGCCGG GGCGGATTAC GTACAAGGCG
GCGCAGCGCA GCTTTGCGGG GCCGGTGACT CAGTCGTATC CGTTGCCGGT GTTTCCGCAG
GGCGTGTGCG TGGAATGCGT GCTGCGTGCC ATGGGCAAGC AGCATGCGTT TGCCAACAAG
AACGGCTGA
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| Protein sequence | MDFKTLLQHL FAPAHRLYAL EGEGPIAELA VEAWLGREAL SELFEWRVVA ASANARFALE
SFIGQRVTLV TTLADGTQAR RTGLIRQAEQ LGADGSLARY RLTVVPWFWL ATQQRHSQVF
QNRPLADILE QVLSPYAPYA AWRFAAGAED RMAAFGTRSH IAQFRETDYR FVTRLLAEAG
LGFTTVEDEQ APSGHALLIF ADSPRLAEDT ASAAEGGIRY HRAHSQEERD AIQALICHSR
TAVGGVAVAA WDAQAKRAFR AHVPSRFCGI AGSPDAYLSI SPSLAPDTAN AQRIAEQVME
SVEARARLFI GRGSVRTLRS GTRLKIVDCP HLPKDVDGPY PLLIDLVEHC GINNLTADTQ
ATLARKLGGL DAALTFDTPP SPPESGPGPF GFMAPHEVIE RFTPTADLLT AARAHGYAGQ
FRAGDARRPW RPVVSHPDTG RLYAEPTARG VQSAIVVGPN GETEASGDAE HHTTPRGQVR
VRFPWQQGER PDDRSTGWLL VAQRQAGAGM GWQWLPRIGQ EVLVKFQEDD IDQPVVIGAL
YNGQGEAGIA PTPGGQVAKG VRQEADPETL YRLGSDSAAS AQGNLAAGHS PAWHGLGTEA
EGHRNAAALS GFKSAEHGGR GANLLVFDDS DGQLRTQLAT TQAYSQLNLG HLIHQQDNRR
GSFRGQGFEL RTDGYGAVRG QAGVLLTTYR DATSGKAVPT GDNAAGIALI RQAKQLTASL
SQGATTHQTA ALSTAKDDSA PLAKQEKAAS GMVDGKALDA AQQDAAAGNT ATQGKVPHQS
EATVQLAGRA GLVAIAGQDL QFANGESVVL ASGQDTNVAV GKQARIHAGQ GIGVAAGLSK
AGDDNIGLQL TAGQDNLDVQ AQHDALGLLS KDDLKLVSAN LHVDFAAAKR IRLATAAGAS
ITLEGGNIIV ETPGRITYKA AQRSFAGPVT QSYPLPVFPQ GVCVECVLRA MGKQHAFANK
NG
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