| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03929 |
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| Symbol | RSp0550 |
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| ID | 1222857 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 690842 |
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| End bp | 692614 |
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| Gene Length | 1773 bp |
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| Protein Length | 590 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637240410 |
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| Product | activation/secretion signal peptide protein |
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| Protein accession | NP_522111 |
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| Protein GI | 17548771 |
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| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG2831] Hemolysin activation/secretion protein |
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| TIGRFAM ID | |
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Plasmid Coverage information |
| Num covering plasmid clones | 22 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.217288 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACACA AGAAAAAATC ACTGCCGATC GCACTGGGCG CTATCGGCCT TCTGATGTCG
TCTCATCCAG CCGGCGTCTC CGCACAAACA CCCCCCACCC AATCGGCCGC CACCGCAGCC
GCCAACACCG AACAGGAACA ACGCCTCCGC CAGCAACAAC AAGCCCGCGA ACGCGAACAA
GCCGTGCAGG CCCCCGCAGT CCGCGCCCAG CAAGCCGCAC CAGCCGAGTT CCCCGACATC
CCCACCGAAA CACCCTGCTT CCGCATCAAC CGTTTCGCAC TGGAGGTCCC GCAGGACTTG
CCCGAGGCCG CCCGTATCAA GGGCGCCTCT GCTTTGCCCC AAGACCCCTT CGCCTTCGCC
CAGGCATGGC TTGACCACTA CAACAGCACC TGCATCGGCA AACAAGGCGT GGACCTGCTC
ACCAAGGGAG TCTCGCAAGC CATCCTGAGC CGGGGCTATG TGACCACGCG CGTACTGCTG
CCCCAGCAGG ACCTGAGCAC CGGCACGCTG CGCTTCGTCC TGGTGCCCGG CATGATCGGC
CAGATCCGTT TCGCGCAGGC CGATGTGCGG GGCACCTGGA AATCCGCCTT CCCCTCACGC
CCGGGCGACC TGCTGAACCT GCGCGACCTC GAACAGGGCC TGGAGCAAAT GAAGCGCGTC
GCCAGCCAGG ACGTCGACAT GCAGCTCGTG CCCACGGACG TGCCGGGCGT GAGCGATGTG
GTGATCTCGG TCAAGCGCAC CAAGCCCTGG ACGGTCGTCG CTGCGGTAGA CAATTCCGGC
ACGCGCTCGA CCGGCAAGCT GCAAGGCAAC CTGAGCCTCA GCCTCGACAA CCCGCTGGGC
CTGAACGACC TGTTCAACGT GGGCTACAGC CAGGACCTGG ATTTCAGCAA CAAGGAACAT
GGCACCCACG GCTGGAACGG CTTCTACTCG GTGCCGTGGG GGTACTGGAC GGCGACGGTG
TCAGCGTATT CCAGCACCTA CTTCCAGCAG ATCGCCGGCG TCAACCAGAC CTTCGTGTCG
AGCGGCAATT CGCAGAACTT CGATATCAAG CTGCAGCGCG TCATCGAGCG CTCGCAGAAC
GACGTGCTGG GGGTGCAGTT CCGCCTGTCC AAGCGGTTCG GCAAGAACTT CGTCGACGAC
ACCGAGATTC CCCAGCAGCG GCGCAACAAC ACGGTGGTGG AAACCGGCCT GACGGATCGC
CACTACTTCG GGGCCGCGCA GTTCGACGGC AGCCTGCTGC TGCGCCACGG CGTGGGCGAC
CTGGGCGCGC AGGACGACAC GCTGGCCGAT GGCGGTGGCC CGACCTGGCA CTATCGCATG
CTGGTGGCGG ATGCCAACCT GTCGGTGCCG TTCAAGGTGG GGACGCAGCC GCTGCGGTAT
GTGACCACGT TCCGTGGACA GTTCACCAAC GACCATCTGT ATTCGATCGA CGCGATCACC
ATCGGCAGCC GCTACACCGT GCGGGGCTTC GATGGCGAGA TGTCGCTTGT CGGCGATCGG
GGTTTCTACT GGCGCAATGA GCTGCAAGCG CCGATCGGCA ACACCGGCCT GTCGCTCTAT
GGCGGTCTCG ACTACGGCCA TGTCTATGGC CCGTCGACGG TGGGCTTGGC GGGCACCCAA
CTGGCGGGTG CCGTGATCGG GCTGCGCGGT GGATGGGGGA CGCGGGCCGG TTCGTTCTCT
TATGACCTGT TCGCCGGCAC GCCGGTCTAT AAGCCTGCGG CGTTCCAAAC TGCCCGGGTG
ACAGCGGGCT TTCAATTGAT CTATCAATAC TGA
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| Protein sequence | MKHKKKSLPI ALGAIGLLMS SHPAGVSAQT PPTQSAATAA ANTEQEQRLR QQQQAREREQ
AVQAPAVRAQ QAAPAEFPDI PTETPCFRIN RFALEVPQDL PEAARIKGAS ALPQDPFAFA
QAWLDHYNST CIGKQGVDLL TKGVSQAILS RGYVTTRVLL PQQDLSTGTL RFVLVPGMIG
QIRFAQADVR GTWKSAFPSR PGDLLNLRDL EQGLEQMKRV ASQDVDMQLV PTDVPGVSDV
VISVKRTKPW TVVAAVDNSG TRSTGKLQGN LSLSLDNPLG LNDLFNVGYS QDLDFSNKEH
GTHGWNGFYS VPWGYWTATV SAYSSTYFQQ IAGVNQTFVS SGNSQNFDIK LQRVIERSQN
DVLGVQFRLS KRFGKNFVDD TEIPQQRRNN TVVETGLTDR HYFGAAQFDG SLLLRHGVGD
LGAQDDTLAD GGGPTWHYRM LVADANLSVP FKVGTQPLRY VTTFRGQFTN DHLYSIDAIT
IGSRYTVRGF DGEMSLVGDR GFYWRNELQA PIGNTGLSLY GGLDYGHVYG PSTVGLAGTQ
LAGAVIGLRG GWGTRAGSFS YDLFAGTPVY KPAAFQTARV TAGFQLIYQY
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