| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03738 |
|---|
| Symbol | RSp0629 |
|---|
| ID | 1222936 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 765488 |
|---|
| End bp | 768361 |
|---|
| Gene Length | 2874 bp |
|---|
| Protein Length | 957 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637240489 |
|---|
| Product | putative VGR-related protein |
|---|
| Protein accession | NP_522190 |
|---|
| Protein GI | 17548850 |
|---|
| COG category | [S] Function unknown |
|---|
| COG ID | [COG3501] Uncharacterized protein conserved in bacteria |
|---|
| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 11 |
|---|
| Fosmid unclonability p-value | 0.198638 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGGACATGC GCACGAACAT CACGGAAGTC GTCAACGCCA TCCGCTCGGG CATGCTCCAG
GCCGGCCGGC TGGTCAAGCT GGACACGCCG CTGGGCGCGG ATCAGCTCCT GCCTCAGCGG
GTCCATGGAT GCGCTCGCAT CGGACGCAAC TACGATTTCC AGATCGATGC GATTCACGTG
CTGGATGCCT TCAAGCCGCG CGACCTGATG GCGCAGCCCG TCACGCTCTG GATACAGCAG
ACCGACCACA CCTACGCGCC GCATCACGGT TATGTCCACG CCGTGCACAA AATCGGCTCG
GACGGCGGCG TGCATGCGGT ACAGCTCACC GTGTCGTCGT GGCTGCATTT TCTGCACTAT
CGCCATGACG CGCGCAACTG GCAGGACAAG ACCGTCGAAC AGATTCTTGC CGATGTGTTC
AACCGGCATC AGCGCGCCCA GGGTGCGTTC CGTTTCGTGC TGCGCAACCC GCTGCCGGTC
CGCTCTTTCG TCCAGCAGTT CGAGGACGAC TGGAATTTCG TGCACCGGCT GATGGAAGAG
GAAGGGCTGT TCTTTTATTT CGAGCAGGCG GAGGATGGCA AGTCGCACAC GATGGTGATC
GTGGACAGCG TGGACGCCTT GCCGGCATCC GGCCCGGCCC GAGTGCCGTT CTGCCGCAGC
GGTGTGGGCG AAGAAAGCGA TGGCTTCACG CACTGGGAAG AGGCCGGCGA ACTCCATAGC
ACGCAGCTGA CCACGCGCAC TTTCGACTAC AAGCAACCGG CCTCGGCGGC CTGGCCCAAG
GGCACGAGCA TCCCGACCAC CGGGCAAAGC GCCCTGCCGT GGGCGGCGGA GGTGTACGAA
TACACCGGCG CCTATACGTT CGGCCAACAG GCCCAGGGCG ACCGGCTGTC GCGCATCCGC
GTTGAACAAT GGGAATCCGC CGCGCAACGC GTGTGCGGCA TGGGCGGCCT GCGACGCATC
GATGCGGGGC GCTGGCTCGA GCTGGTCGAT CACCCGGAGC GCCAGGCGGG CGATCGCCCC
GAGGACTGGC AATTCATCAC GATCGAAGCA GTCTGGGGCA TCGAGAACAA CCTGCCCGTA
TCGTGCGCGA CGCGGCAGAT GGCGCGCAGC CTGAAGGCGG ACATCGATGC CCTGCGTGCC
ACGCATGGCG GAGATGCAGA TGCCCTGGCC GCGCGCCATG CGGACGGCAG CACCGGTTTC
TTCGTCATGC AGATCGAAGC GCAGCGCCGA GCGCTGCCGT ACCGCAGCCC GTTCGAGCAC
CACAAGCCGG TCATGCAAAT TCAGACGGCC ACGGTTGTCG CGGAGGAGAA CGCGCTGGTC
TGCACCGATG GGCTGAACCG GATCAAGGTC CGGCTCCACT GGGACCGGCT CAACGGCGAC
CTCGCCAGCG CCAGCTGCTG GGTGCGCACC GCCTTCGCGG ACGCGGGCGA CGGTCGGGGC
GCCGTACACG TGCCGCGCCC CGGCGAAGAG GTCTTGATCG GCTGGGTCGA TGGCGATTGC
GACCGCCCGA TCGCGATCGG CCGCGTGTTC AACGGCGCCA ACCGTCCACA GTGGCACACC
AACGGGATTC TGTCGGGCCT GCAGTCGCGT GAGTACGGCG GCAAGGGCTA CAACATGCTG
GTGATGGACG ACGCGACCGG ACAACCCCGC GTGCAGCTCG CCAGCAGCAG CACCGGCGCC
CACCTGCACC TGGGCTACCT GATCGACCAG AATGGCAACA TGCGCGGCGC GTTCCTCGGC
AACGGGTTCG ACCTGAAGTC GCAAGCTTAC GGCGCGGTGC GTGGCGGGCT CGGTCTGTAC
TTCTCCACCC ACCCGGTGAC ATCGCAGCCG CTCGATGCGC GCCCGGCCAG AAACCAGCTG
GCGGACGCCG CGCGAGTCAT GGACTCGTTG TCCCAGGCCA GCGCCGCGCA CCAGGCGGAC
AGCCTGGGTT CAGGGCACGA CACGCTCAAG TCCTTCGCGG ACGCGACCGA GCACAGCGTT
ACGGGCGCAT CGCCCGATAG CGCGTCGGCA GGTGGCCTGA CGGCGGGCGG CGGCACCGGT
CAGGCCAACG CCTTCAGCCA ACCGCTGATG CTGCTGGCCA GCCCCGCAGG CATCGGCCTG
TCCACCCAAC AATCGACGCA TATCGCCAGT GACGCCCATA CCAATCTCGT CAGCGGCCAG
AGCACGCATA TTGCAGCGGG CCGCTCGCTG ATCGCCAGCG TGGTCGAGAC GATCAGCCTG
TTCGTGCAGA ACGCGGGAAT GAAGCTGTTC GCGGGCAAGG GCAAGGTCCA GATTCAGGCG
CACGCCGACG ATGTGGAAGT CTCCGCGCAC AAGGCGGTGC GGCTCGCGTC GGTGACCGAC
AGCATTCACG TGGTCGCTAA GAAGGAAGTG CTGCTCACGG CGGGCGGCGC CTACATTCGC
ATCGCGGACG GCAAGATTGA GGTACACGCA CCCGGCATGC TCGACTTCAA GGGCTCGGAT
CACGCGTTCG GTGGGCCGGC GCAGATGAAT GCCGATCACC CAGCGTTTCC GAAGAACATG
CCCACCACGC CGCTTGCGCT CAGCGCGGCT GCCTCACCGG CTTCCACCTC GTCCTTGCTG
GCCGGCATGC CTTACACGCT GCTCGCTGAC GGCGCGGTCT TTAAGCAAGG CGTGCTGGAC
GCGAGTGGGC AACTTCTGAT CGACCACTTT CCCGCCACAC AGCAATACCG CCTGCAGCTC
GCCAATGGCG TCACGCACGA CATCCCGGTG CCCGCCGAAT ATCACAGTGC GGCCAACGGC
GAGTTGGCGA ACCAGGGGTT CCATTTCCAC GAAAGCAACG AAACCGGCGC GGCAGACCGG
GCCACGCACA GGCAGGCTTA CCACGACGTG CTGAACCCTG ACGCGAACGC TTGA
|
|---|
| Protein sequence | MDMRTNITEV VNAIRSGMLQ AGRLVKLDTP LGADQLLPQR VHGCARIGRN YDFQIDAIHV
LDAFKPRDLM AQPVTLWIQQ TDHTYAPHHG YVHAVHKIGS DGGVHAVQLT VSSWLHFLHY
RHDARNWQDK TVEQILADVF NRHQRAQGAF RFVLRNPLPV RSFVQQFEDD WNFVHRLMEE
EGLFFYFEQA EDGKSHTMVI VDSVDALPAS GPARVPFCRS GVGEESDGFT HWEEAGELHS
TQLTTRTFDY KQPASAAWPK GTSIPTTGQS ALPWAAEVYE YTGAYTFGQQ AQGDRLSRIR
VEQWESAAQR VCGMGGLRRI DAGRWLELVD HPERQAGDRP EDWQFITIEA VWGIENNLPV
SCATRQMARS LKADIDALRA THGGDADALA ARHADGSTGF FVMQIEAQRR ALPYRSPFEH
HKPVMQIQTA TVVAEENALV CTDGLNRIKV RLHWDRLNGD LASASCWVRT AFADAGDGRG
AVHVPRPGEE VLIGWVDGDC DRPIAIGRVF NGANRPQWHT NGILSGLQSR EYGGKGYNML
VMDDATGQPR VQLASSSTGA HLHLGYLIDQ NGNMRGAFLG NGFDLKSQAY GAVRGGLGLY
FSTHPVTSQP LDARPARNQL ADAARVMDSL SQASAAHQAD SLGSGHDTLK SFADATEHSV
TGASPDSASA GGLTAGGGTG QANAFSQPLM LLASPAGIGL STQQSTHIAS DAHTNLVSGQ
STHIAAGRSL IASVVETISL FVQNAGMKLF AGKGKVQIQA HADDVEVSAH KAVRLASVTD
SIHVVAKKEV LLTAGGAYIR IADGKIEVHA PGMLDFKGSD HAFGGPAQMN ADHPAFPKNM
PTTPLALSAA ASPASTSSLL AGMPYTLLAD GAVFKQGVLD ASGQLLIDHF PATQQYRLQL
ANGVTHDIPV PAEYHSAANG ELANQGFHFH ESNETGAADR ATHRQAYHDV LNPDANA
|
|---|
| |