| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03713 |
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| Symbol | RSp0253 |
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| ID | 1222384 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 325341 |
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| End bp | 327791 |
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| Gene Length | 2451 bp |
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| Protein Length | 816 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637240112 |
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| Product | hypothetical protein |
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| Protein accession | NP_521814 |
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| Protein GI | 17548474 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.235814 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTCAACCG CCCAACCGCC CTCCGCCCCG CGCCGCCTGC TGTTCCGCCT GTTGCCCGGC
GTGGTCCTTG CCGCCCTGCT ACCGTTCGTG GGGCTGATCG CGGTGGCGAT CTCGACGGTC
TACGACGATA CGCGCAGGGA GATCGACAGC CGCCTCGAAC AGGCCATCAC GCAGGCGGCC
CGCCCGCTGG AAGCGCACCT GACCGATGCC ATCGACCGCC TGTCCACCGC CACCGAGACC
GACACCGCCC CGACCAGCAC CGCGGAAGGC CAGGCCTGGC TCGATGCCCA CCCCGACCTG
CGCGGCGTCT TCGACAACCT GGTCGTCGTC AGCGCCAGCG GCATCGTGCT GGCCGACGCC
CCCGCCCTGC CGCAACAGCG CGGCACCGAC ATGGCGTGGC ATCCCATCTT CAAGGCGGTG
CGCGAGTCGC GGCGCCTCCA GATCCCCGAA CCCTTCCTGT CGTCGGCGGG ACAGCGGCCG
GTAGCCTCGT TCGCCGCGCC GCTGCATGGG CCGGATGGCG GCTTCTCCGG ACTGGTGATC
GGCTCGATCG AACTGGCGCG CAATCCCATC CTGGCGGACG TGGAAAACAC GCGCATCGGC
CGCACCGGGC ATCTGCTGGT GGTCTCGGAG CGGGGCCGCT ATATCGTCGG GCCAGACCAC
GCGCGCCTGC TGCAGCAGGC CCCGGACCTG GCCGACGGGC AGCCGGCTGC GCGCGCGCGC
GCGCAAGGCT GGAACGACAG CACGGAAATC CACCGGCCCG GGCAGTCGCC GGTCATCGTC
AGCTATCGCG CGCTGAACGC CGTGCCGTGG AGCATCGGCG CCTGGTGGCC CGCGCAGGAA
GCCTATGCCG GCGCCGCGCG CACCACGCGC ACGCTGGTGG CCGCCGGGCT GGCCTTCGGC
GCGGCCTGCC TGCTGTTCGC CTGGTTCTGG CTCGAACGCG CGACCAGCCC GCTCGAACGG
CTGCGCCACG AGGTGGATGC CGGCATGCCG ATCCACACGC CGCCGGCCCC CATCGGCCGG
CCAATCCTGA GCGAGTCCCC CGCGCCCGGA CCGCTCGCGC GACTGGCCGA TCTTGCCCAG
CCGGACACCC GGACGTTCGA CCCCGCCACC GAGGTCGGCG CCCTGGCCGG CAGCGTGGGC
CGGCTGGTGC AGTACTGGGA ACGGGCGCTG GGCGCCGCCG AGCAGGAAGC CGCGTTCTTC
CGCGCGATCG CCGAGCAGGC GCCGGTGGGG CTGGCCTTCC TGGACCGATC GCTGGCAGTC
CCGTTTGCCA ATGTCCGTTT CGAACGGCTG GTGGGCGCCA GCAGTGCCAC CATCGTGCGC
GCCCTGCACG ACGGCGACAG CACGACAACC TCCCCTGCAG CGCAAGCCGT GGCGGCCGTG
CTGCGGCAAC TGCCCCGCGT GCCGCTGGCG CTGGCGGACC GCCCCGTGGT GATCGCAACC
GGGGAAGGCG CCGGCAGCGG TGCCGTCCTG CTGACGGCCC GGCCCGCGGG CGGCGCGGGC
GCACCGCCGG TCGGCTGGAT CATCGCCGTG GTCGATGCCA CGGCCGAGCA GCGCGCCAAG
GAAGCGCTGG AGCAGGAGGT GCGTGCCGCC CTGCTCGTGC TCGACGCCAT CCAGGAACCC
CTGCTGACCA TCGACGGCGA CGGCATCGTC ACGCATGCCA GCCGCGCCAT CGAGACACTG
ACCGGCACGC ACCCCGCCAG CGCGATCGGC CAGTCGATCA ACCGGCTGCT GCACCTGATC
GAGCACGAGA CCAACCGGCG CGTCATCCCC ACGCAGCTGC TGCGCGCGGG CGGCACGCTG
CCGTGCGGAC TGCGCATGGA GGCCGCCGAC AGCCGGCGGC ACGACGTGGA ATTGTCCTGG
GGGCCGCTGC CCGGCACGTC TGGCGCCGGC GTGCTGGTGC TGCGGGATGT CTCCGCCACA
CGCGAGACCG TGCAGCGCAT CGCCTGGGAC GCCACCCACG ACGTGCTGAC CGGCCTGCTC
AACCGCCGCG GCTTCGACGC CATCCTGCAT GCGCAGGTGG AGGCCCATCG CGGAGCCCGC
GGCGCGCCAC GCGCACCGCT GGCGCTGCTC ATGATCGACC TCGACGGCTT CAAGGCGATC
AACGATTGCT ACGGCCATGC CGCCGGCGAC GACGTCCTGC GCGGCATCGC CGAGCGGGTG
GTGCAGAACA CGCGCACGCA GGATCACGTC GCCCGGCTGG GCGGCGACGA GTTCGCCGTG
ATCCTGCCCA ATTGCGACCT GCAGACCGCC GTGACCTTCG CCGACCGCAT CCGCGCGGCG
CTTGCCCGCC AGCCGGTGCT GGCCGCCGGG GCACGCGCCC AGGTCGCGCT GTCGCAGGGG
GTAGTGGAAT TGCAGGCCGG CGATGCCGAT GCAGCAGCCG TCCTGGCACG CGCGGATACC
GCCTGCTACC GCGCGAAGAG CGAAGGCCGC AACACCATCG CCACGGGCTG A
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| Protein sequence | MSTAQPPSAP RRLLFRLLPG VVLAALLPFV GLIAVAISTV YDDTRREIDS RLEQAITQAA
RPLEAHLTDA IDRLSTATET DTAPTSTAEG QAWLDAHPDL RGVFDNLVVV SASGIVLADA
PALPQQRGTD MAWHPIFKAV RESRRLQIPE PFLSSAGQRP VASFAAPLHG PDGGFSGLVI
GSIELARNPI LADVENTRIG RTGHLLVVSE RGRYIVGPDH ARLLQQAPDL ADGQPAARAR
AQGWNDSTEI HRPGQSPVIV SYRALNAVPW SIGAWWPAQE AYAGAARTTR TLVAAGLAFG
AACLLFAWFW LERATSPLER LRHEVDAGMP IHTPPAPIGR PILSESPAPG PLARLADLAQ
PDTRTFDPAT EVGALAGSVG RLVQYWERAL GAAEQEAAFF RAIAEQAPVG LAFLDRSLAV
PFANVRFERL VGASSATIVR ALHDGDSTTT SPAAQAVAAV LRQLPRVPLA LADRPVVIAT
GEGAGSGAVL LTARPAGGAG APPVGWIIAV VDATAEQRAK EALEQEVRAA LLVLDAIQEP
LLTIDGDGIV THASRAIETL TGTHPASAIG QSINRLLHLI EHETNRRVIP TQLLRAGGTL
PCGLRMEAAD SRRHDVELSW GPLPGTSGAG VLVLRDVSAT RETVQRIAWD ATHDVLTGLL
NRRGFDAILH AQVEAHRGAR GAPRAPLALL MIDLDGFKAI NDCYGHAAGD DVLRGIAERV
VQNTRTQDHV ARLGGDEFAV ILPNCDLQTA VTFADRIRAA LARQPVLAAG ARAQVALSQG
VVELQAGDAD AAAVLARADT ACYRAKSEGR NTIATG
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