| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03712 |
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| Symbol | RSp0254 |
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| ID | 1222385 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 328070 |
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| End bp | 331606 |
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| Gene Length | 3537 bp |
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| Protein Length | 1178 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637240113 |
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| Product | hypothetical protein |
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| Protein accession | NP_521815 |
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| Protein GI | 17548475 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.433519 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 14 |
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| Fosmid unclonability p-value | 0.713314 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | GTGCCGAAGC ATGCTTTCTT TCCCACCACG CTGCGCGGTC GCTTGCTCGC CTTGGCCGCT
GTGGCCGCGT TGCCGGCCGT CGTCGTGGCG ATCGCCGGCG TGGCGCTCTA TCGGGACCGG
CTGACCGATC ACCTCGAACA ACGTCTCTCG TACGAAACCC AGAGCGCCGC GGCGCGCGTG
GGCATGGTGC TGTCCAACGC GGACCAGCTG CTGTCGGTCG TGGTGGCGGA CGAATCCGTC
CTGCGCCTGG ACCGCGACGA ATGCACCCGC TTCGTCAGCC GCGTCATCCA CAACCAGAGC
GACTTCGCCA CGCTGGGCGT TGCCGATGCG CACGGCAAGC TGGTGTGCAC GCCGGTGCCG
GGGGCCATCG GGCTCGATGT TGCCGACCGC GAGTTTTTTC GCGAGCTGAT TGCGACAGGG
CGTCCGTCGC TGTCGAATTT CCTGACCGGC CGGACTTCGC ACCAGCCCGT CATCGTTGCG
ACGCGCGCCG TGGTCGGCCC CGACGGCGGC ATCCGGGGCG TGGCCTACGC GGCGATCCGG
CAGAGCGCGC TGATGGTGGC GGCCGGCAGC GCGTCGTCGG GGCCGGTCTA CCTGGTGGAC
GGCGCGGGCA CGGTGCTGTC CGGCACGCAT GCCGCCCTGT CCGGCGAGGG GCCCGGCGTC
ACCCGGGGCG ACCTGGTGAG CGCGGCCGGC CCCGAGCCCG GCGCCACGGT CTTCGAGACC
GACGCCGACG GCACGCTGCG CGCCTATGCC GCGATGGCCG TGCCCCATGC GACCAGCGGG
CGGCTGCGCC TCGTGCGCGG TATCGATGCG ACCGACATGG CGCGCCAGCA GCGCGACGTG
ACGCTGGCCG GCGGCGGCGC CATCGTGCTG ATGCTGGTGT TGCTGCTGGC GCTGATCCAG
ATGGCGATGC GGCGCCTGGT GCTGCCGCGC GTCGATGCGC TGGTCGATGC CGCACGGCAC
TATGCCGCGG GTGACTTCTC CGCGCGCGTG GCCGAGCAGG GCGGCGCCCG CGACGAGCTG
TCGCTGCTCG AGCGCACCTT CAACGAGATG CGCACGGCCA TCCTGCGCCA CGACGAGACC
GTCCACCACC TGACCGAGCG CTTCCAGCGC GTGGCGCGCG CCACCAACGA CTGGATCTTC
GACTGGGACA TCGCCACGGG CGAGTCCTGG GCCAACGCCA GCCTGCACCG CCTGCTCGGC
AGCGACGCGC TGCTGGCGCA GGGCGACGAG GACGGCGTGT CGCGCACGCT GACCTTCCAG
CAGTTCGTGC ATCCCGAAGA CATGGCGGCA TTCGGCCGGG GCCTGCGGGC CGCGCTGCAT
TCGGATCGCG ATGCCTGGCA CCACGTCTGC CGCGTGATCG ACGCCAGCCG CGCGGTGCGC
ACGGTGGAGA TCCGCGCCAG CATCTATCGC GGCAAGGACG GGCGCGCCGT GCGCATGGTC
GGCGGGGTCA CCGACATCTC GCAGCGCTCG GCCATGGAGG CGGATCTGCG CGCCAGCGAG
GCCAACCTGC GCGTGGCCGA GCAGATCGCC CTGCTCGGCA GCTGGCGCTG GGACGTGCTG
CGCGACACCG CCACCTGGTC GTCGGGCATG TACCTGCTGA CCGGCGTGTC GCCGGGGCCG
CCGCCGTCGT TCGCGCAGCA GGCGCAGTTC TTCACCGGCG ACAGCTACAA CCGCCTGCGC
GAGGCGGCCA GCCGCGCCGT CACCGAGGGC GTGCCGTACT CGCTGGAGCT GGAGATGATC
CGCCGCGACG GCGAGCACCG CTGGGTGCTC TCGCGCGGCA ACATCGAGCG CAACGAGCGC
GAAGAGGTGG TGGCGCTGTT CGGCACCATG CAGGACATCA CCGAGCGGCG CGAGTCCGAT
GAGCAGTTGC GCCTGCTGCG GCGCGTGGTC GAGTCGGTGC CGTCGGGCAT CACCGTGGCC
GATGCGCAGC AGCCGGACCT GCCGCTGGTC TACGTCAACC CCGGCTTCGA GCGCATGACC
GGCTACCGCG CGGAGGAGGT GCTGGGCCGC AACTGCCGCT TCCTGCATTC GTCCGAGCCG
GGGCAGCCCG CGCTGAACGA GGTGCGCGCC GCGCTGCGCG ATGCCAGCGA GATCCGCGTG
CTGCTGCGCA ATTTCCGCAA GGACGGCCAT GCGTTCCTCA ACAACTTTCT GCTCTCGCCG
GTGCGCGACA GCCAGGGCGC GGTCACACAC TACGTCGGCA TCCAGGACGA CGTGACCGAG
CAGGAGATGA CACGCGCGCG CCTGGCCCAG CACGCCACCG TCGATCCGCT GACCGGCCTG
CCCAACCGCA CGTTGCTGGC CGACCGCGTG CAGCAGGGGG TGGAGATGGC CGCGCGCCAG
CGCAGCCGCT TCTACGTCGC GCTGATCAAC ATCGACCGCT TCAAGGTCGT CAACGACAGC
CTGGGGCACC TGCTGGGCGA CGAGGTGCTG CGCCGCATCG CCGAGCGCCT GCGCGATGCG
GCCGACACCG TCGATACGGT GGCGCGCTTC GGCGGCGACG TCTTCGCGCT GGTGATCTCG
CACGCGGGCT CGCACGGCAC CGATCTCGGT TTCGACCTGT TCGCCGAGCC GATCCGCGTG
GAGGGGCACG AGGTGTTCGT GACCGCCAGC ATCGGCGTGG CGGAGTATCC GGCGCACGGC
TCGGACAGCG AGACCCTGGT GCGCCACGCC GAGATGGCGA TGTATTTCGC CAAGCAGAAC
GGCCGCAACC GGCTGGAGTT CTTCGCGCCC GAGATGGATA TCGGCGTGTC GTACCGGCTG
AACCTGGAGC ACCAGATTCG CGCCGCGCTG GAGCAGGGCC AGTTCCGCCT GCTGTACCAG
CCGCAGATCG ACACCAAGAC CGGCCGCATC TGCGGTCTGG AGGCGCTGAT CCGCTGGATC
CACCCGACGC GCGGGCTGCT GCCGCCGGCG GCGTTCATCC CGGTGGCCGA AGAGAGCGGG
CTGGTGGTCG AGATCGGCAA CTGGGTGCTG GCCGAAGCCG CGCAGCAGCG CGCCGCATGG
CATGCGCGCG GGCTGGGCGA GGACCTGACC ATCGCGGTCA ACGTATCGCC GCTGCAGTTC
AAGCGCGGCA CCGTGCTGCC GACGCTGCTG AGGCTGCAGC GCCAGCATGG CCTGGGCTCG
GGCTTTCTCG AGCTGGAGGT GACCGAGTCG ATGCTGATGG AGGGCACCGA GCGCACCATC
GAAGACCTGA CCGCCATTCG CCAGCTGGGG GTGCGCATCG CCATCGACGA CTTCGGCACG
GGCTATTCCA GCCTGGCGTA CCTCAAGCGC CTGCCGATCG ACCTGATCAA GATCGACCGT
GCCTTCGTCA AGGACATCGA CCGCGACTCC AACGACGCGG CCATCTGCAC GACGGTGGTG
GTGCTGGCCC ACAACCTGGG CGTGAAGGTG TGCGCGGAAG GCGTCGAAGA CGCGGCGCAG
TCGGCCTTCC TCGCCTCCCA CCAGTGCGAT GTGCTGCAGG GCTATTACTT CTCCGAGCCG
CTGCTGCCCG AAGCCGTGAC GGCGCTGCTG GAGCGCGACG CGCGCTTCAC GGTGTAG
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| Protein sequence | MPKHAFFPTT LRGRLLALAA VAALPAVVVA IAGVALYRDR LTDHLEQRLS YETQSAAARV
GMVLSNADQL LSVVVADESV LRLDRDECTR FVSRVIHNQS DFATLGVADA HGKLVCTPVP
GAIGLDVADR EFFRELIATG RPSLSNFLTG RTSHQPVIVA TRAVVGPDGG IRGVAYAAIR
QSALMVAAGS ASSGPVYLVD GAGTVLSGTH AALSGEGPGV TRGDLVSAAG PEPGATVFET
DADGTLRAYA AMAVPHATSG RLRLVRGIDA TDMARQQRDV TLAGGGAIVL MLVLLLALIQ
MAMRRLVLPR VDALVDAARH YAAGDFSARV AEQGGARDEL SLLERTFNEM RTAILRHDET
VHHLTERFQR VARATNDWIF DWDIATGESW ANASLHRLLG SDALLAQGDE DGVSRTLTFQ
QFVHPEDMAA FGRGLRAALH SDRDAWHHVC RVIDASRAVR TVEIRASIYR GKDGRAVRMV
GGVTDISQRS AMEADLRASE ANLRVAEQIA LLGSWRWDVL RDTATWSSGM YLLTGVSPGP
PPSFAQQAQF FTGDSYNRLR EAASRAVTEG VPYSLELEMI RRDGEHRWVL SRGNIERNER
EEVVALFGTM QDITERRESD EQLRLLRRVV ESVPSGITVA DAQQPDLPLV YVNPGFERMT
GYRAEEVLGR NCRFLHSSEP GQPALNEVRA ALRDASEIRV LLRNFRKDGH AFLNNFLLSP
VRDSQGAVTH YVGIQDDVTE QEMTRARLAQ HATVDPLTGL PNRTLLADRV QQGVEMAARQ
RSRFYVALIN IDRFKVVNDS LGHLLGDEVL RRIAERLRDA ADTVDTVARF GGDVFALVIS
HAGSHGTDLG FDLFAEPIRV EGHEVFVTAS IGVAEYPAHG SDSETLVRHA EMAMYFAKQN
GRNRLEFFAP EMDIGVSYRL NLEHQIRAAL EQGQFRLLYQ PQIDTKTGRI CGLEALIRWI
HPTRGLLPPA AFIPVAEESG LVVEIGNWVL AEAAQQRAAW HARGLGEDLT IAVNVSPLQF
KRGTVLPTLL RLQRQHGLGS GFLELEVTES MLMEGTERTI EDLTAIRQLG VRIAIDDFGT
GYSSLAYLKR LPIDLIKIDR AFVKDIDRDS NDAAICTTVV VLAHNLGVKV CAEGVEDAAQ
SAFLASHQCD VLQGYYFSEP LLPEAVTALL ERDARFTV
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