| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03685 |
|---|
| Symbol | RSp0279 |
|---|
| ID | 1222411 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 361545 |
|---|
| End bp | 362972 |
|---|
| Gene Length | 1428 bp |
|---|
| Protein Length | 475 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 67% |
|---|
| IMG OID | 637240139 |
|---|
| Product | signal peptide protein |
|---|
| Protein accession | NP_521840 |
|---|
| Protein GI | 17548500 |
|---|
| COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
|---|
| COG ID | [COG0823] Periplasmic component of the Tol biopolymer transport system |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0875463 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 14 |
|---|
| Fosmid unclonability p-value | 0.498425 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGTCTGC CCTTTGCCAT TACCCGTTTC GCCGCCGGTG CCGCCCTCGC CGCGCTCGGC
ACCTCCGCTT TCGCCAACTG CGTCGCGAAT CCGCCGACGC AGTCCAACGC ATCGTTTCCC
GCCAGCCTTG CCGGCAAGCT CGCGTACCAC AGCTACGTGA GCTACGGCGA CGGCACCAGC
CAGCTCTTCA TCTACGACTT CGCCGCCCGC ACGCTGACGC AGGTATCGAA GAGCGCCTGG
GGCATCCAGG ACCCGATGAA CGCCGTGTTC AGCCCGGACG GCAAGTGGCT CGCCTTCATG
GGCATCACCA ACAACGCGTG GAACGTGTTC CTGTGGCAGG TCGGCTCGAG CAGCCAGCCG
GTCAACATGA CCAACAGCAC CGGCCAGACC CGCAACGAAG ACCCGAAGTT CAGCGCCGAC
GGCAAATCGC TGTTCTTCAA GCAGAGCGGC GACGTCATGC AGGCCACGCT GTCGTACACC
AGCACGGGCC CGATCTTCAC GTCGGTCGTG GACATCACCA ACACGGCGCC GGCCACCGAG
AACTCGATGC CGTTCGCGAC GCCCGACGGC AGCGCGGTCT ACTTCGCCAC CGGCACCGGC
GCCGGCATGG GCCTGTACAA GGAAACCATC GCCACCCACG CCACGTTCGC CTTCGACACG
CCGGCCGGGC TGCAGACCTA CTACCCGATC GTGCGCGCCG ACGGCACCGT GTTCTACGCC
CGCTGGAAGG ACGCCGCCAG CCAGGCCGAC CAGATCTACA CCAAGGTCAA CCCGGGCGAC
ACGCCCAACC AGCTGTCGAT CAACGACTGC AACAGCAACA ACTCCGACCC GGCGCCGGTC
AACGGCACCA ATTACGTGTT CTTCTCGTCC ACCACCGCGG GCGGCTACCA GCTCTACCTC
GGCGATGTGA GCACGGGCCA GCGCTGGAGC CTGTCGCAGT TCGGCGTCAA CTCGGACACC
ACCAAGGCCA AGCTCGGCTC CAACTACTAC GCCGGCGGCA CGACCGCCAG CACGTCGGGG
CAGACGACGC GGCTGCTCTC GCAAGGCATG CCGGCCAGCG CCTCGTCGAG CTACAACAGC
AGCCTGGGCG CCGCCAATGC CTTCGACGGC GACACCGCCA ACACCCGCTG GGATTCGATC
GAGGGCAGCG CCGCCGGCAC GCAATGGCTG ATGGTGGATC TCGGCACCGT GCGCACCATC
AACGGCGTCG ACCTGTACTG GGACGCGGGC GCCAAGACCT ACGCCATCCA GACCTCCAGC
GACGGCGTCA ACTGGACCAG CATCTACAGC ACGTCCAACG GCATCGCCTA CGGCCACGCC
GTGCTGTCGA ACCTGCGCGG CAGCGGCCGC TACGTGCGCA TGTACGGCAC GCAGCGCGCC
ACGCAGTGGG GCTACTCGAT CGACGAGATG CAGGTCTGGG GGTACTGA
|
|---|
| Protein sequence | MRLPFAITRF AAGAALAALG TSAFANCVAN PPTQSNASFP ASLAGKLAYH SYVSYGDGTS
QLFIYDFAAR TLTQVSKSAW GIQDPMNAVF SPDGKWLAFM GITNNAWNVF LWQVGSSSQP
VNMTNSTGQT RNEDPKFSAD GKSLFFKQSG DVMQATLSYT STGPIFTSVV DITNTAPATE
NSMPFATPDG SAVYFATGTG AGMGLYKETI ATHATFAFDT PAGLQTYYPI VRADGTVFYA
RWKDAASQAD QIYTKVNPGD TPNQLSINDC NSNNSDPAPV NGTNYVFFSS TTAGGYQLYL
GDVSTGQRWS LSQFGVNSDT TKAKLGSNYY AGGTTASTSG QTTRLLSQGM PASASSSYNS
SLGAANAFDG DTANTRWDSI EGSAAGTQWL MVDLGTVRTI NGVDLYWDAG AKTYAIQTSS
DGVNWTSIYS TSNGIAYGHA VLSNLRGSGR YVRMYGTQRA TQWGYSIDEM QVWGY
|
|---|
| |