| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03187 |
|---|
| Symbol | RSp1243 |
|---|
| ID | 1223555 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 1581079 |
|---|
| End bp | 1582110 |
|---|
| Gene Length | 1032 bp |
|---|
| Protein Length | 343 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637241108 |
|---|
| Product | putative transmembrane cytochrome bd-II oxidase (subunit II) oxidoreductase protein |
|---|
| Protein accession | NP_522804 |
|---|
| Protein GI | 17549464 |
|---|
| COG category | [C] Energy production and conversion |
|---|
| COG ID | [COG1294] Cytochrome bd-type quinol oxidase, subunit 2 |
|---|
| TIGRFAM ID | [TIGR00203] cytochrome d oxidase, subunit II (cydB) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.337789 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 20 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGCCA TGCCCGACCT CACCCAACCC GCCGGCTGGC TGCCGGTGGT GTTCATGGCC
CTGATGGGCA TCGCCGTGCT CGCCTACGTG GTCCTGGACG GCTACGACCT CGGCGTCGGC
ATCCTGCTGC GCCGCGCCGA CGACGCCGAG AAAGACACCA TGATCGCCTC CATCGGCCCC
TTCTGGGATG CCAACGAAAC CTGGCTGGTG CTCGGCGTCG GCCTGCTGCT GGTGGCGTTT
CCGGCGGCGC ACGGAGCGAT CCTCGGCGCG CTCTATTTCC CGGTGGCGCT GATGCTGTTC
GGGCTGATCC TGCGCGGGGT GGCGTTCGAC TTCCGCGTCA AGGCACGCGC GCACCACAAG
CCGTGGTGGA ACCGCGCGTT CTACGCGGGC TCGGTCATCG CCACCGTGTC GCAAGGCGTG
ATGCTGGGGT TTTACATCAC CGGCTTCCGC TACACCCCGA TCAACGTCGT CTTCGCGTTC
TGCACGGCGG CCGGGCTGAC CGCCGGCTAC CTGCTGCTGG GTGCCACCTG GCTCATCATG
AAGACCGAAG GCGCGCTGCA GCTGCGCGCG GTGCAGTGGG CGCGCGGCAG TCTGTGGTTC
ACGGCGCTGG GCGTGGCGGC CGTGTCGCTG GCCACGCCGT GGGTCAGCGC ACGCGTGTTC
GAGAAGTGGT TCGCGCTGCC GAACCTCATC CTGCTGGCGC CGGTGCCGCT GGTGACAGTG
GCCCTGTTCG GCCTGATCGA CTGGGTGCTG CGCCGCCTGC CGCAGCAGAT CGGCAAAGGC
GACGAGCACC TGGTCTGGGC GCCCTTCGTC GGCACCGCGG CGATCTTCCT GCTGGCGTTC
AACGGCCTCG CCTACAGCCT GTTCCCCTAC CTCGTGGTGG ACCGGCTCGA CATCTGGCAG
GCGGCCAGCG CGCCGGAGTC CCTGCAATTC ATGCTGGTGG GCGTGGTGAT CGTGCTGCCG
ACCATCGTTG CGTACACCAT CTACGCCTAC AAGGTGTTCC ACGGCAAGGC GACCGAGCTG
CGCTACTACT GA
|
|---|
| Protein sequence | MNAMPDLTQP AGWLPVVFMA LMGIAVLAYV VLDGYDLGVG ILLRRADDAE KDTMIASIGP
FWDANETWLV LGVGLLLVAF PAAHGAILGA LYFPVALMLF GLILRGVAFD FRVKARAHHK
PWWNRAFYAG SVIATVSQGV MLGFYITGFR YTPINVVFAF CTAAGLTAGY LLLGATWLIM
KTEGALQLRA VQWARGSLWF TALGVAAVSL ATPWVSARVF EKWFALPNLI LLAPVPLVTV
ALFGLIDWVL RRLPQQIGKG DEHLVWAPFV GTAAIFLLAF NGLAYSLFPY LVVDRLDIWQ
AASAPESLQF MLVGVVIVLP TIVAYTIYAY KVFHGKATEL RYY
|
|---|
| |