| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03143 |
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| Symbol | RSp1199 |
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| ID | 1223511 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1523692 |
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| End bp | 1526793 |
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| Gene Length | 3102 bp |
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| Protein Length | 1033 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637241064 |
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| Product | drug efflux transmembrane protein |
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| Protein accession | NP_522760 |
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| Protein GI | 17549420 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 20 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCTGT CCGCCACCTT CATCGCCCGG CCGGTCGCCA CCGCGCTGCT GACCATCGGC
GTGGCGCTGG CCGGCATCGC GGCGTTCAAC CTGCTGCCGG TGTCGCCGCT GCCGCAGGTG
GACTTCCCCA CCATCTCGGT CAACGCATCG CTGCCCGGCG CCAGCCCCGA GACCATGGCC
GCCACCGTGG CGACGCCGCT GGAGCGCTCG CTCGGCCGCA TCGCCGGCAT CACCGAGATG
ACCTCGCAGA GCGCGCTGGG CTCGACGCGC GTGACGCTGC AGTTCGACCT GTCGCGCGAC
ATCGACGGCG CGGCGCGCGA CGTGCAGGCC GCCATCAACG CCTCGCGCAG CCTGCTGCCC
TCGGGCCTGC CGAGCAACCC GACCTACCGC AAGGTCAACC CGGCCGACGC GCCGATCATG
ATCCTGGGGC TGACCTCCGA CACCAAGTCG CGCGGCGAGC TGTACGACGC GGCCTCGACC
ATCCTGGCGC AGAAGCTGTC GCAGATCACG GGCGTGGGGC AGGTCAACAT CGGCGGCGCA
TCGCTGCCGG CGGTGCGGGT GGAGCTGAAC CCGACGGCAC TGAACAAGTA CGGCATCTCG
ACCGAGACCG TGCGCACCGT CATCACCGCC ACCAACGCCA ACAAGCCCAA GGGCATGCTG
GAAGCCGGCA ACCGCGTCTG GACGCTCTAC GCCAACGACC AGGCCAGGCA CGCCGAGGAG
TACAAGCCGC TCATCATCGC CTACCGCAAC GGCGCGCCCG TGCGCCTGTC GGACGTGGCC
GAGGTGACCG ACAGCGTGCA GGACATCCGC AACTACGGCT CGGCCAACGG CAAGCCCTCG
GTGCTGCTGA TCATCAACCG GCAGCCGGGC GCCAACATCA TCGACACGGT CGACCGCATC
AACGCCATCC TGCCCTACCT GCGCAACACC ATCCCCGCCC AGATCAACCT GGACGTGATG
ATGGACCGCA CGCCCACCAT CCGCGCCTCG CTGCGGGACG TCGAGCGCAC GCTGATGCTG
TCGATCGGGC TGGTCATCAT GGTGGTCTAC CTGTTCCTGC GCAACCTGCG CGCCACGCTC
ATCCCCAGCG TGGCGGTGCC GGTGTCGCTG ATCGGCACCT TCGGCGTGAT GTACCTGTGC
GGCTACAGCC TCGACAACCT CTCGCTGATG GCGCTGACGG TGGCCACCGG CTTCGTGGTC
GACGACGCCA TCGTGGTGCT GGAGAACGTC TCGCGCCACA TCGAGAACGG CATGCGACCG
ATGCAGGCCG CGCTCAAGGG TGCGCGCGAG GTCGGCTTCA CAGTGGTGTC GATGAGCTTT
TCGCTGATCG CCGTGTTCAT TCCGCTACTG ATGATGGGCG GCATCGTGGG GCGGCTGTTC
CGGGAGTTCG CGGTCACGCT GTCGGTGGCG ATCCTGGTGT CGCTGGCGAT CTCGCTGACC
ACCACGCCGA TGATGTGCGC ACGCCTGCTC AAGCCCGCCA GCGAGGAAGA GCCCGGCTGG
TTCCACCGCA AGACCGAGGG CTTCTTCAAC CTCCTGCTCG ACGGCTATCG CCATTCGCTG
GCGTGGGCGC TGCGCCACAG CTGGCTGACG CTGCTGATCC TGCTGGCCAC GGTGTGCCTG
AACGGCTACC TGTACGTCGT GGTGCCCAAG GGCTTCTTCC CGCAGCAGGA CGTGGGCCGC
CTGATGGGCT TCATCCAGGC CGACCAGGCG ATCTCGTTCC AGGCCATGCG GACCAAGCTG
GTCGATTTCA TCCACATCGT CCAGCAGGAC CCGGCGGTGG AGAACGTGGT CGGCTTCACC
GGCGGCAGCC AGATCAACAG CGGGCAGATG TTCATCCAGC TCAAGCCGCT GGCCGAGCGC
AAGCTGTCGG CCGACCAGGT CATCAACCGC CTGCGCGGCA AGCTCGCGCG CGAGCCCGGC
GCCAACCTGT TCCTGCAGGC CGTGCAGGAC ATCCGCATCG GCGGCCGCCC CAGCAACGCG
CAGTACCAGT ACACGCTGCA GGCCGACAAC CTCGAAGAGC TGCGCGCCTG GGAGCCGAAG
ATCCGGCAGG CGCTCACGCA GATCAAGTCG CTGGTGGACG TCAACACCGA CGCGCAGGAC
AAGGGCCAGC AGACCGCGCT GGTGTTCGAC CGCGACAAGG CGATGGCGCT GGGCATCACG
CCCAAGGACA TCGACAACGC GCTCAACAAC GCCTTCGGCC AGCGCCAGGT GTCGACCATC
TACAACCCGC TCAACCAGTA CCGGGTCGTG ATGGAGGCCG CGCCGCAGTA CTGGCAGAAC
CCGGAGGGGC TGCGCGACAT CTACCTGATC ACCGCGTCGG GCGCCCAGGT GCCGCTGTCC
ACCTTCTCGC ACTACGGGCC GACCAACACG CCGCTGGCGG TCAACCACCA GGGCCAGTTC
GCCGCCAGCA CGCTCTCGTT CAACCTGGCG CCCGGCGCCT CGCTGTCGGC CGCCACGCAG
CAGATCCAGG ACGCCATGAA CCGCATCGGC GTACCGACCA CGGTGCACGG CAGCTTCCAG
GGCACGGCGC GGGCGTTCCA GGATTCGCTC TCCAGTCAGC CGGTGCTGAT CCTGTTTGCG
CTGATCACCA TCTACATCGT GCTGGGCGTG CTGTACGAGA GCTACGTGCA CCCGATCACG
ATCCTGTCGA CGCTGCCGTC GGCGGGCGTG GGCGCGCTGC TGGCGCTGAT CGTCACGGAC
ACCGACTTCT CGGTCATCGC GCTGATCGGC GTGATCCTGC TGATCGGCAT CGTCAAGAAG
AACGCGATCA TGATGATCGA CTTCGCACTG GAGGCCGAGC GCAGCCAGGG CATGAGCCCG
GCGGACGCCA TCTTCCACGC CTGCGTGCTG CGCTTCCGCC CGATCCTGAT GACGACCATG
GCCGCGCTGC TGGGCGCGCT GCCGCTCGCG CTCGGCCACG GCGACGGCGC GGAGCTGCGC
CAGCCGCTGG GGATCTCCAT CGTCGGCGGG CTGCTGGTCA GCCAGATCCT GACGCTCTAC
ACCACGCCGG TGGTCTACCT GGCGCTCGAC CGGCTGCGCC TGCGCCGCGG CGGCCGCGTC
AAGGACGCAC CGCTGCCCGC ACTGGATTCG CAAGGAAGCT GA
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| Protein sequence | MNLSATFIAR PVATALLTIG VALAGIAAFN LLPVSPLPQV DFPTISVNAS LPGASPETMA
ATVATPLERS LGRIAGITEM TSQSALGSTR VTLQFDLSRD IDGAARDVQA AINASRSLLP
SGLPSNPTYR KVNPADAPIM ILGLTSDTKS RGELYDAAST ILAQKLSQIT GVGQVNIGGA
SLPAVRVELN PTALNKYGIS TETVRTVITA TNANKPKGML EAGNRVWTLY ANDQARHAEE
YKPLIIAYRN GAPVRLSDVA EVTDSVQDIR NYGSANGKPS VLLIINRQPG ANIIDTVDRI
NAILPYLRNT IPAQINLDVM MDRTPTIRAS LRDVERTLML SIGLVIMVVY LFLRNLRATL
IPSVAVPVSL IGTFGVMYLC GYSLDNLSLM ALTVATGFVV DDAIVVLENV SRHIENGMRP
MQAALKGARE VGFTVVSMSF SLIAVFIPLL MMGGIVGRLF REFAVTLSVA ILVSLAISLT
TTPMMCARLL KPASEEEPGW FHRKTEGFFN LLLDGYRHSL AWALRHSWLT LLILLATVCL
NGYLYVVVPK GFFPQQDVGR LMGFIQADQA ISFQAMRTKL VDFIHIVQQD PAVENVVGFT
GGSQINSGQM FIQLKPLAER KLSADQVINR LRGKLAREPG ANLFLQAVQD IRIGGRPSNA
QYQYTLQADN LEELRAWEPK IRQALTQIKS LVDVNTDAQD KGQQTALVFD RDKAMALGIT
PKDIDNALNN AFGQRQVSTI YNPLNQYRVV MEAAPQYWQN PEGLRDIYLI TASGAQVPLS
TFSHYGPTNT PLAVNHQGQF AASTLSFNLA PGASLSAATQ QIQDAMNRIG VPTTVHGSFQ
GTARAFQDSL SSQPVLILFA LITIYIVLGV LYESYVHPIT ILSTLPSAGV GALLALIVTD
TDFSVIALIG VILLIGIVKK NAIMMIDFAL EAERSQGMSP ADAIFHACVL RFRPILMTTM
AALLGALPLA LGHGDGAELR QPLGISIVGG LLVSQILTLY TTPVVYLALD RLRLRRGGRV
KDAPLPALDS QGS
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