| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03142 |
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| Symbol | RSp1198 |
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| ID | 1223510 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1520570 |
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| End bp | 1523695 |
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| Gene Length | 3126 bp |
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| Protein Length | 1041 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637241063 |
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| Product | drug efflux pump transmembrane protein |
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| Protein accession | NP_522759 |
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| Protein GI | 17549419 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAATCCCT CCCGAATCTT CATCCTGCGG CCCGTGGCGA CGACCCTGCT GATGGTCGCC
ATCCTGCTGT CGGGCCTGGT GGCGTACCGG ATGCTGCCGC TGTCCGCGCT GCCGGAGGTG
GACTACCCCA CCATCCAGGT GACGACGCTC TACCCGGGCG CCAGCCCCGA CGTGATGACC
TCGTCGATCA CCGCGCCGCT GGAGCGCCAG TTCGGCCAGA TGCCGGGCCT CAAGCAGATG
ACCTCCGCCA GCTCGGGCGG CGCGTCCGTC ATCACGCTGC AGTTCGACCT GTCGCTGTCG
CTCGACATCG CCGAGCAGGA GGTGCAGGCG GCCATCAACG CGGCCGGCAA CCTGCTGCCG
ACCGACCTGC CGATGCCGCC GATCTACAGC AAGGTCAACC CGGCCGATGC GCCGATCCTG
ACGCTGGCCA TCACCTCCAG GACGCTGCCG CTGCCCAAGC TGGAAGACAT CGTCGACACG
CGCGTCGCGC AGAAGCTGTC GCAGCTGCCG GGCATCGGCC TGGTGAGCAT CAGCGGCGGG
CAGCGGCCGG CGGTGCGCAT CCAGGCCAAC ACGCAGGCGC TGGCGGCGCT CGGGCTGTCG
ATCGACGACA TCCGCACCGC CATCGGCAAC GCCAACGTCA ACGGCGCCAA GGGCAGCTTC
GACGGGCCGA TGCGCGCCTC CACCATCGAC GCCAACGACC AGCTGCGCTC GGCCGCCGAA
TACGGCACGA TGATCGTCGC CTACAAGAAC GGCGCGCCGA TCCGCCTGAC CGACGTGGCG
CAGATCATCG ATGGCGCCGA GAACAGCAAG CTGGCCGCCT GGGCCAACAC CACGCCGGCG
ATCATCCTCA ACGTGCAGCG CCAGCCGGGC GCCAACGTGA TCGACGTGGT CAACCGCGCC
AAGGCCCTGC TGCCGCAGCT CAAGGACACC CTGCCCGCCA ACATCGACGT GGCGGTGCTG
ACCGACCGCA CCACCACCAT CCGCGCCTCC GTGGCCGACG TGCAGTTCGA GCTGCTGCTG
GCGGTGGCGC TGGTGGTGAT GGTGATCTTC CTGTTCCTGC GCAACATACC GGCCACCATC
ATCCCGGCGG TGGCGGTGCC GCTGTCGCTG GTGGGCACCT TCGGCGTGAT GTACCTGGCC
GGCTTCTCGG TCAACAACCT CACGCTGATG GCGCTGACCA TCGCCACCGG CTTCGTGGTG
GACGACGCCA TCGTCATGAT CGAGAACATC GCCCGCTACA TCGAAGACGG CGACCCGCCC
ATGGAAGCCG CGCTCAAGGG CGCCAGGCAG ATCGGCTTCA CCATCATCTC GCTGACGTTC
TCGCTGATCG CCGTGCTGAT CCCGCTGCTG TTCATGAGCG ATGTGGTGGG GCGGCTGTTC
CGCGAGTTCG CCATCACGCT GGCGGTGTCG ATCCTGATTT CCGCGGTGGT CTCGCTCACG
CTCACGCCGA TGATGTGCGC GCGCCTGCTG CGGCACATTC CCGAGCCCGA GCAGACCCGC
TTCTATCACG CCGCCGGCCA GTTCTTCGAC AACGTGATCG CGCAATACGG CCGCATGCTG
CAATGGGTGC TGGACCGCCA GCGCACCACG CTGCTGGTCG CCATCGGCAC GCTGGCGCTG
ACGGGGCTGC TGTACGTCTA CGTGCCCAAG GGCTTCTTCC CGGTGCAGGA CACGGGCGTG
ATCCAGGGCA TCTCGGATGC GACGCAGTCG ATCTCGTTCC CGGCCATGGC CGAGCGGCAG
CAGAAGCTGG CCGAGGTGAT CCTCAAGGAC CCGGCGGTGG AGAGCCTGTC GTCGTTCATC
GGCGTGGACG GCACCAACAC CACGCTCAAC AGCGGCCGCA TGCTGATCAA CCTCAAGCCC
AAGGACGCGC GCGACGCCGA TGCCACCGAG ATCATCCAGC GCCTGCAGCC GGAGCTGGCC
AAGGTGGGCG GCATCTCGCT GTTCATGCAG CCGGTGCAGG ACCTGACCAT CGAAGACCGC
GTCAGCCGCA CGCAGTACCA GTTCACGGTG GAAGACCCCG ACCCGAACAA CCTGTCCAAG
TGGGTGCCCA GGCTGGTGGA GCGCCTGCAG CAGACCGGTG AGCTGCGCGA CGTCGCCAGC
GACCTGCAGG ACAACGGCCT GCGCGCCTAC GTGCAGATCG ACCGCGACAA GGCCGCCGTC
TACGGCGTCA CCACGGCGGC GGTGGACAGC GCGCTGTACA GCGCGTACGG CCAGCGCCTG
ATATCGACCA TCTTCACCCA GTCGAACCAG TACCGCGTGG TGCTGGAGGC CGCTCCGCAG
CTGCAGAAGG GGCCGCAGTC GCTGTACGAC CTGCGCGTGG CGTCCACCGG CGGCCAGCAG
GTGCCGCTGG GCGCCTTCGC CACGGTGGTG GAGCAGCCGG GCTCGCTGGT GGTCAACCAC
CAGGGCCAGT TCCCGTCGGC CACCATCTCG TTCAACCTGG CGCGCGGAGC GTCGCTGGGC
GCGGCGGTCG ACGCGATCAA CGCCGCCGAG CAGGCGATCG GCCTGCCGGC CAGCATGCAG
ACCAGCTTCC AGGGCGCGGC GCTGGCGTTC CAGTCGTCGC TGTCCAACGA GCTGTGGCTG
ATCCTGGCCG CCATCATCAC CATGTACATC GTGCTGGGCG TGCTGTACGA GAGCACGATC
CACCCGGTGA CGATCCTGTC GACGCTGCCC TCGGCGGGCG TGGGCGCGCT GCTGTCGCTG
CTGGTCTCCG GCAAGGACAT GGGCATCATC GCCATCATCG GCATCATCCT GCTGATCGGC
ATCGTCAAGA AGAACGCGAT CATGATGATC GACTTCGCGC TGGAGGCCGA GCGCGAGCAG
GGCATGGCCC CGCGCGATGC CATCTACCAG GCGTGCCTGC TGCGCTTCCG GCCGATCCTG
ATGACGACCA TGGCGGCCCT GCTGGGCGCC CTGCCCCTGA TGCTGGGCAC CGGCGTGGGC
TCCGAGCTGC GCCAGCCGCT GGGCATCACC ATGGTGGGCG GGCTGCTGGT CAGCCAGGTG
CTGACGCTGT TCACCACGCC GGTCATCTAC CTGGCCTTCG ACAGCCTGGG CCACCGCCTG
CGCGACTGGC GCGAGCGCCG CGCCGCCCGC CGCACCGGCG CTGACCAGTC CGGCAGCCAG
CCATGA
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| Protein sequence | MNPSRIFILR PVATTLLMVA ILLSGLVAYR MLPLSALPEV DYPTIQVTTL YPGASPDVMT
SSITAPLERQ FGQMPGLKQM TSASSGGASV ITLQFDLSLS LDIAEQEVQA AINAAGNLLP
TDLPMPPIYS KVNPADAPIL TLAITSRTLP LPKLEDIVDT RVAQKLSQLP GIGLVSISGG
QRPAVRIQAN TQALAALGLS IDDIRTAIGN ANVNGAKGSF DGPMRASTID ANDQLRSAAE
YGTMIVAYKN GAPIRLTDVA QIIDGAENSK LAAWANTTPA IILNVQRQPG ANVIDVVNRA
KALLPQLKDT LPANIDVAVL TDRTTTIRAS VADVQFELLL AVALVVMVIF LFLRNIPATI
IPAVAVPLSL VGTFGVMYLA GFSVNNLTLM ALTIATGFVV DDAIVMIENI ARYIEDGDPP
MEAALKGARQ IGFTIISLTF SLIAVLIPLL FMSDVVGRLF REFAITLAVS ILISAVVSLT
LTPMMCARLL RHIPEPEQTR FYHAAGQFFD NVIAQYGRML QWVLDRQRTT LLVAIGTLAL
TGLLYVYVPK GFFPVQDTGV IQGISDATQS ISFPAMAERQ QKLAEVILKD PAVESLSSFI
GVDGTNTTLN SGRMLINLKP KDARDADATE IIQRLQPELA KVGGISLFMQ PVQDLTIEDR
VSRTQYQFTV EDPDPNNLSK WVPRLVERLQ QTGELRDVAS DLQDNGLRAY VQIDRDKAAV
YGVTTAAVDS ALYSAYGQRL ISTIFTQSNQ YRVVLEAAPQ LQKGPQSLYD LRVASTGGQQ
VPLGAFATVV EQPGSLVVNH QGQFPSATIS FNLARGASLG AAVDAINAAE QAIGLPASMQ
TSFQGAALAF QSSLSNELWL ILAAIITMYI VLGVLYESTI HPVTILSTLP SAGVGALLSL
LVSGKDMGII AIIGIILLIG IVKKNAIMMI DFALEAEREQ GMAPRDAIYQ ACLLRFRPIL
MTTMAALLGA LPLMLGTGVG SELRQPLGIT MVGGLLVSQV LTLFTTPVIY LAFDSLGHRL
RDWRERRAAR RTGADQSGSQ P
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