| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03124 |
|---|
| Symbol | RSp1417 |
|---|
| ID | 1223729 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1781119 |
|---|
| End bp | 1782522 |
|---|
| Gene Length | 1404 bp |
|---|
| Protein Length | 467 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637241280 |
|---|
| Product | transmembrane efflux transmembrane protein |
|---|
| Protein accession | NP_522976 |
|---|
| Protein GI | 17549636 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | [TIGR00711] drug resistance transporter, EmrB/QacA subfamily |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 27 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAAAGCAT CTGAATTTGA TCGCACCCAG AAATGGGTAT TGATATTGAC TTCGATCGCG
ACGTTGATGG CAATGCTGGA TGCAATGGTC GTCGCGACTG CGACGAGTGC CATTCGCGCG
GACCTCGGTG CTTCGCTCAG CGCGTTGCAA TGGACCATGA ACGCCTACAA CCTGAGTCTG
GCGGCCCTGT TGATGACAGG AGCAGCATTG GGCGATCGCT TCGGTCGGCG GAGGGTATTC
GTCACCGGGC TCTGCGTGTT TGTGGCGGCC TCCATCGCGT GTGCCCTCGC GAGAAGCGCG
GAATGGCTGA TCGCCGCGAG AGTGGTTCAG GGGGCTGGGG GTGCCCTCGT CACCCCCTTG
TCAATGGCGT TGCTGAGTGC CGCGTTTCCA CCCGAACGCC GCGGGAAAGC ACTGGGTTTA
TTCGGCGGCA TCACGGGACT GGCGCTGATC CTGGGACCGG TTCTGGGTGG TGTCATTGCC
GGCAACCTGC CCTGGCAGTG GATTTTCTGG CTGAATGTGC CCATTGGACT GCCGCTGATC
GTGCTAGCCG TACGGCGCAT CCCAGACAGC AAGGGGCCGG CTGCCGCGCT TGATATTCCG
GGCGCGCTGC TCGTCATGGG AGCGTCCATC GGTCTTGTCT GGGGGCTCAT GCGGGGCAGC
AGCAAGGGGT GGTCTGACAG CGAGGCGCCA TTGGCGCTGG TTGTCGGTGC CGCTTTTATG
ATCTGTTTCG TCTTGTGGGA GCGGCGCGCC AAACATCCCA TGATCCCTAT GCGACTGTTT
GCTTCGCGAG CATTCTCGTC GGGCATTGCC GCTTGTTTTC TCTTCTATGC CGGGATGTAC
GGGGTCGTGT TCTTCCTCCC GCAATTTTTC CAGTCGGCCC AGGGGCATGA CCCGTTTGCC
GCCGGCCTGC GCCTGCTTCC ATGGACGGTC ACCTTGTTCT TCATTGCGCC GCTCGCCGGC
AGCATGGTGG ATCGGATCGG TGAGCGCTCG GTGATGGTCA CCGGCCTGCT CCTGCAGGCC
ATCGGATTTG CCTGGATTGC GTGGGCTGCA TCGCCAGGGA CGTCGTACCT GAACCTGGTT
GCTCCGCTGG TGATTTCCGG GGCCGGTATA TCGATGGCTG GACCTGCGGC ACAGAAAGCG
GTGCTGGGGG CCGTCACGGT ACAAGACATC GGCAAGGCGT CCGGGGTTTT CAACATGTTC
CGGATTCTCG GCGGCGCAAC CGGCATTGCC ATTGCGGTCG TCGCATTTTC GATCTGGGGA
AATCTGGGTT CGGAGAAAGA TTTCAGCGAG GGATTCGCGC ATGTGATGGG CGTTTGTGCC
GTCCTGTCAA TGGCGGCTGT CCTCTCGGCA ACGTGGCAAC CAACGCATCG CGCCGCGACC
GCAGCGCAGT CGGCCAATCT GTGA
|
|---|
| Protein sequence | MKASEFDRTQ KWVLILTSIA TLMAMLDAMV VATATSAIRA DLGASLSALQ WTMNAYNLSL
AALLMTGAAL GDRFGRRRVF VTGLCVFVAA SIACALARSA EWLIAARVVQ GAGGALVTPL
SMALLSAAFP PERRGKALGL FGGITGLALI LGPVLGGVIA GNLPWQWIFW LNVPIGLPLI
VLAVRRIPDS KGPAAALDIP GALLVMGASI GLVWGLMRGS SKGWSDSEAP LALVVGAAFM
ICFVLWERRA KHPMIPMRLF ASRAFSSGIA ACFLFYAGMY GVVFFLPQFF QSAQGHDPFA
AGLRLLPWTV TLFFIAPLAG SMVDRIGERS VMVTGLLLQA IGFAWIAWAA SPGTSYLNLV
APLVISGAGI SMAGPAAQKA VLGAVTVQDI GKASGVFNMF RILGGATGIA IAVVAFSIWG
NLGSEKDFSE GFAHVMGVCA VLSMAAVLSA TWQPTHRAAT AAQSANL
|
|---|
| |