Gene RS03124 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRS03124 
SymbolRSp1417 
ID1223729 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp1781119 
End bp1782522 
Gene Length1404 bp 
Protein Length467 aa 
Translation table11 
GC content61% 
IMG OID637241280 
Producttransmembrane efflux transmembrane protein 
Protein accessionNP_522976 
Protein GI17549636 
COG category[G] Carbohydrate transport and metabolism 
COG ID[COG2814] Arabinose efflux permease 
TIGRFAM ID[TIGR00711] drug resistance transporter, EmrB/QacA subfamily 


Plasmid Coverage information

Num covering plasmid clones27 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAAAGCAT CTGAATTTGA TCGCACCCAG AAATGGGTAT TGATATTGAC TTCGATCGCG 
ACGTTGATGG CAATGCTGGA TGCAATGGTC GTCGCGACTG CGACGAGTGC CATTCGCGCG
GACCTCGGTG CTTCGCTCAG CGCGTTGCAA TGGACCATGA ACGCCTACAA CCTGAGTCTG
GCGGCCCTGT TGATGACAGG AGCAGCATTG GGCGATCGCT TCGGTCGGCG GAGGGTATTC
GTCACCGGGC TCTGCGTGTT TGTGGCGGCC TCCATCGCGT GTGCCCTCGC GAGAAGCGCG
GAATGGCTGA TCGCCGCGAG AGTGGTTCAG GGGGCTGGGG GTGCCCTCGT CACCCCCTTG
TCAATGGCGT TGCTGAGTGC CGCGTTTCCA CCCGAACGCC GCGGGAAAGC ACTGGGTTTA
TTCGGCGGCA TCACGGGACT GGCGCTGATC CTGGGACCGG TTCTGGGTGG TGTCATTGCC
GGCAACCTGC CCTGGCAGTG GATTTTCTGG CTGAATGTGC CCATTGGACT GCCGCTGATC
GTGCTAGCCG TACGGCGCAT CCCAGACAGC AAGGGGCCGG CTGCCGCGCT TGATATTCCG
GGCGCGCTGC TCGTCATGGG AGCGTCCATC GGTCTTGTCT GGGGGCTCAT GCGGGGCAGC
AGCAAGGGGT GGTCTGACAG CGAGGCGCCA TTGGCGCTGG TTGTCGGTGC CGCTTTTATG
ATCTGTTTCG TCTTGTGGGA GCGGCGCGCC AAACATCCCA TGATCCCTAT GCGACTGTTT
GCTTCGCGAG CATTCTCGTC GGGCATTGCC GCTTGTTTTC TCTTCTATGC CGGGATGTAC
GGGGTCGTGT TCTTCCTCCC GCAATTTTTC CAGTCGGCCC AGGGGCATGA CCCGTTTGCC
GCCGGCCTGC GCCTGCTTCC ATGGACGGTC ACCTTGTTCT TCATTGCGCC GCTCGCCGGC
AGCATGGTGG ATCGGATCGG TGAGCGCTCG GTGATGGTCA CCGGCCTGCT CCTGCAGGCC
ATCGGATTTG CCTGGATTGC GTGGGCTGCA TCGCCAGGGA CGTCGTACCT GAACCTGGTT
GCTCCGCTGG TGATTTCCGG GGCCGGTATA TCGATGGCTG GACCTGCGGC ACAGAAAGCG
GTGCTGGGGG CCGTCACGGT ACAAGACATC GGCAAGGCGT CCGGGGTTTT CAACATGTTC
CGGATTCTCG GCGGCGCAAC CGGCATTGCC ATTGCGGTCG TCGCATTTTC GATCTGGGGA
AATCTGGGTT CGGAGAAAGA TTTCAGCGAG GGATTCGCGC ATGTGATGGG CGTTTGTGCC
GTCCTGTCAA TGGCGGCTGT CCTCTCGGCA ACGTGGCAAC CAACGCATCG CGCCGCGACC
GCAGCGCAGT CGGCCAATCT GTGA
 
Protein sequence
MKASEFDRTQ KWVLILTSIA TLMAMLDAMV VATATSAIRA DLGASLSALQ WTMNAYNLSL 
AALLMTGAAL GDRFGRRRVF VTGLCVFVAA SIACALARSA EWLIAARVVQ GAGGALVTPL
SMALLSAAFP PERRGKALGL FGGITGLALI LGPVLGGVIA GNLPWQWIFW LNVPIGLPLI
VLAVRRIPDS KGPAAALDIP GALLVMGASI GLVWGLMRGS SKGWSDSEAP LALVVGAAFM
ICFVLWERRA KHPMIPMRLF ASRAFSSGIA ACFLFYAGMY GVVFFLPQFF QSAQGHDPFA
AGLRLLPWTV TLFFIAPLAG SMVDRIGERS VMVTGLLLQA IGFAWIAWAA SPGTSYLNLV
APLVISGAGI SMAGPAAQKA VLGAVTVQDI GKASGVFNMF RILGGATGIA IAVVAFSIWG
NLGSEKDFSE GFAHVMGVCA VLSMAAVLSA TWQPTHRAAT AAQSANL