| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03120 |
|---|
| Symbol | RSp1422 |
|---|
| ID | 1223734 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1788933 |
|---|
| End bp | 1793189 |
|---|
| Gene Length | 4257 bp |
|---|
| Protein Length | 1418 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 72% |
|---|
| IMG OID | 637241285 |
|---|
| Product | putative peptide synthetase protein |
|---|
| Protein accession | NP_522981 |
|---|
| Protein GI | 17549641 |
|---|
| COG category | [Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG1020] Non-ribosomal peptide synthetase modules and related proteins
[COG3319] Thioesterase domains of type I polyketide synthases or non-ribosomal peptide synthetases |
|---|
| TIGRFAM ID | [TIGR01733] amino acid adenylation domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAACGATC GATTCAAGGG TGAGCGCGCG GCGCCGGTCT CGCAGACGGC GCTGCGCGAA
ATGTGGGCGA CCGTCCTGAT GCCGGACGCG GCGCCGGACG CGATCGCGGA CACCGACAAC
TTCTTCGACC TCGGCGGTCA GTCGTTGAGC GCCGTCCTGA TCCTCGCGCA GCTCGCCGAG
CAGACCGGCC TGCAGCTGCT TCCGGCGGTG CTGTTCGAGC ACCCGGTGTT TCGTGACTTC
TGCGAAGCGG TGGCGCAGGC CGCCGTCGAG GCGCCCCACG CCGATGACCC GGCAAGCGGG
GCGCAGGCGG CGGAAGCGGA CCCGGACGAC GACGAGGGGG ACGCCACGGC GCAGGCCTGG
CCGCTTTCGT TTCAGCAGGC GCAGCTGTGG TCGATCAGCC GCCTGGCCGG CAGTAGCGCG
CAATACAACA TCCCGCTGGC GTACGCGCTG GACGGCGAAC TGGACGAGGC GGCGCTCAAG
CTTGCATTCG AACTCACCGC CCGGCGCAAC GAGATTCTCC GCACGACGTA CGGGCAGGGC
GAGGGCGAGC CGTTCCAGAC CGTCCACCCG GCGCTGCCGC TGCCGTGGCG GGTCGAGGCC
GTCGAAGACT CCGCCGCCGT GGCCGCGCGC ATCGAGGCGT TTGCCGGTAC CGAATTCGAC
CTCGGGCGCG ACATGCCCCT GGCCGTGCTG CTGCTGCGCA TCGCGCCGCA ACGGCACGTG
CTGGCGATCT GCGTTCATCA CATCGCGTTC GACGGCTTTT CGATGAAGCC CTTCTTTGCC
GAGCTGTCGG CCGCCTATCG GCTCGCACTT GGCAGCGGCG CACACGCGAT GCGCGACGTG
GATGCGCTGG CCGCGACGGA CCGGCGCGCG CCGCCGGTGC CCTACCGGCG GTTCGCGCAG
CGCTCGCAAC GCCGTGCCGC GCAGGGCAGC CATGCCGCCG GCGTCGCGTA CTTCGCCGAC
TATCTCGACG GTATCGAGGC GCTCAACGCC TTGCCGGTCG ATCGGCCGCG CCGTGCGGTG
GCGGGCACCG CCGTCGCGGC GACGCTGAGC CGGACCGTGT CTCCGGCGCT GCTGGACGCC
CTGAAAACGC TTGCCCGCAG TGCCGAGACC ACGCTGTTCT GCGTCTTCTA CGCGGTGCTG
GGCATCGCGC TCGCGCGCCA TACCGGCCGG CAGGATGTCG TGGTCGGCGT GCCCACCGCG
AACCGCACCG ACAGCGATTG CCTCGACGTC GTCGGGTTCT TTGCGAACAA CGTCGTGCTG
CGCACCCGGG TCGATTTCGC ACAATCGTTC GACACCTTCG TCCGCGCGGT GGCGGAGAAC
GTACAGCGCA CCTTCGCGCA TCACCAGACG CCGTTCGCGT TTGTCGTCGA CGCGCTGTCG
CCGTCGCGCA GCAGTGCGCA CAACCCGATC TTCCAGATCG CGTTCGCGTT CCAGAATTCG
CCCGAACCCG GCGAGCTGCT GTCCGGCCTC CACGCGAGGC CGCTGCCCGT CGCCAATCGG
CGCGCGAAGT TCGACCTGAC CATCAACGTT GCCTTCACGG GCGACGCCGC GCGGATCGAC
TGGGAGTACG ACAGCAGCCT GTTTCTGCCG GCGACGATCG AAGCGCTCGC GGCGCATTAC
CTCGGGCTGC TGCGGGCCGC GACCCCCGAT GCGCCGCTGC ACCGGCTCGA TCCGGTCGAT
GCCGACTCGC CCGAGGGCGC GCTGCTTGCC CGCCTAGCCC GCGCGCGCGA GGTCACGGGC
GGCGCGAGCA TCGTGTCCCG CTTCGACGAC GTAGCCGGGC GCCGGCCGGC GGCGGCGGCC
ATCGTCCATC GTGATGGGGT CATGACCTAC TCGGCCCTGG CGCGGGCGTC CGAGGCGCTG
GCGATGCGCC TGCTCGCGGC GCGCGGTGTC GAGACGCTCG ACGGCGAGCC CGTGGCGTTC
TTTGCGAGCC GCGATCCGGC CACGATCATC GTGGAACTGG CGATTCTCAA GGCGGGCGGG
GCCTATGTGC CGATCGACCG CTCGTATCCG CCGCAGCGGG TCGCGTTCGT GCTTGAAGAC
AGCGGCGCCT GCCTCTTCGT CAAGACGGCC GGCGATGCCT GCGCGGCGCC GCCCGGGAAC
CTCCCCATCG TTGCCTACGA CTGGCGGGCG CCGTCGGAGG CGCCCGCCGA ACCGGCCCAA
CGGCTGCCGC GCCGCCAGCG CGGCGACGCG CCCGCCTATC TGATGTACAC GTCGGGCTCC
ACCGGCAACC CCAAGGGGGT GCGCATCCCG CAGCGCGGTG TCGTGCGCCT GGCGTGTCCG
GACGCCGACA GCCCCCGGTT CGTGCCGCTG TCGAACGAGA CGGTCATGCT GCATGCCTCG
TCGCCCGGCT TCGATGCGTC GACGTTCGAG ATCTGGGGCG CGCTGCTCAA CGGCGGCACG
CTGGTCTGCT ACGCGTCGTC CGTCGTGGAT CCGCGTGAGC TGGTCGAGGT CGTTGCCGCG
CAGGGGGTCA ACACGATGTG GCTCACGGCC GGCCTGCTCA GCGAGTTCGC GGCGATCGAA
ACGCGCCTGC CCCATCTGCG CTGGCTGCTG ACCGGCGGCG ACGTGGTGCC GCCGTCGGCG
GTCGCGCGCC TGCAGGCGCG CGAGCCGCAG CTGACCGTCA TCAACGGCTA CGGCCCCACG
GAAAACACGA CGTTCACCTG CTGCCACACC ATCGAGCGCC CGGTCGATGC GGAGCGTGCG
CTGCCGATCG GCACGCCGAT TCCGGGAACC AGCGTGAAGA TCGTCGGCAC CGGCGGATTC
CGCTGCGGCA TCGGTGAACC GGGCGAGCTC TGGACCGGCG GCGGGGGGCT GGCGGACGGC
TACCACCGCG CGCCCGAGGC GACGCGCGCC CGGTTCGTCG ATGACGGCGG GCGCTGGTAC
CGCACGGGCG ACATCGTCCG GATGCGGCAC GACGGCGTGA TCGACTACCT CGGCCGCGGC
GATGCGCAGG TGAAGATCCG CGGCTATCGG ATCGAGCTGG AGGAGATCGA GCGGTCTCTG
CACGAGCATC CCGCCGTCAG TGCGGCCGCC GTGCTGGTGC TCGGCGACGA CGCACAGAGC
AAGACGCTGG CGGCGTTCGT CGTCGCGGGC GGCGAGCGCG ACGCGGCAGG CCTGCGCGCG
TGGCTCGGCA CCCGCCTGCC CGCTTACGCG GTGCCGGGGC GCTGGTGCTT TGTCGATGCG
CTGCCCGCCA ATGTGAGCGG CAAGGTCGAC CGGCGCAAGC TGCTCGCGCT GGCCGAGGCC
CAGGCGCCGC AGCCCGAGGC GCAGACGGCG CTGTCGCCCG ACGAAAGCCG GGTCGCGCAG
GTCTGGACGC GCGTGCTGGG GCCGCAGGCG CTGCGGCCGG ATTCGGATTT CTTCGATGTC
GGCGGCGATT CGCTCCGTTC GATCCGGGTG GCCGCGGAGC TGGGCAAGGC GTGGGGGCGG
GAGGTTCCGG TCGCGGCGCT GTACGACCAC CCGACGCTGC GCGCGCTGAC GGCATTTCTC
GCCGCCCGCG ATGCCGCGCC GCGCGATCGC GCCCGGCCCG CCGTCTTCGC GATCCCCGGC
GTCGGCGGGC TGGCCGCGGC ATTCGCGCCG CTCGGCACGG AATTGCGCCG GCACGGCATC
GAGCTGGTGG CCTTCGATTC GCCGGGGTGG CACGCCGATC GTACGCTGCC GATCGACGCG
CGCCTGTTGG CCTACGTGCA GCACGTGGTT GATGCGATCC GGCGCCGCAC GCCGCACGGA
CCCTACCAGT TGATCGGGCA CTCGTTCGGC GCGCGCGTGG CGTTCGACGT GGCGCTCGCG
CTCGAAGAAG CGGGCGGCAC GGTCGCGCTG ACGATGCTCG ATGCGCTGCC CGGCAACGAT
CTGGTCGACA TGAGCCGGTG GCGCGTGGGC CAGACGCCGC GCGAGCTTGC CGGATGGTTG
CTCGGCGCGA TGCAGAACGG GGACGTGCCG GCCGAGCCCG GCGAGGATGC CGTCGCATCG
CTCGCGCGCC TGCAGATCTA CGGCGACCTG GACGTGCACG ACGCGCTCGC GCTCGTCGAT
GACCAGATGC TCGCCAGCCG GCGCTACCGC CCCGCGCGGC GGCTGCGCGC GACGCGGGTG
CAGATGGTCT ATGCGGAGCA CGGGCTGATC GGCGCCCATG CGCACGATGC GATCGTCGAC
TCGCTGCGCG CGTGGGCGGA TACGGTTGCC GTCGCGCGTC TGGACGCCGA TCACTTTTCG
ATGCTCAAGG CGGCCCCTGC GCTTGCCGGA CACGTCATGG CTCACGGGCG GGCGTGA
|
|---|
| Protein sequence | MNDRFKGERA APVSQTALRE MWATVLMPDA APDAIADTDN FFDLGGQSLS AVLILAQLAE
QTGLQLLPAV LFEHPVFRDF CEAVAQAAVE APHADDPASG AQAAEADPDD DEGDATAQAW
PLSFQQAQLW SISRLAGSSA QYNIPLAYAL DGELDEAALK LAFELTARRN EILRTTYGQG
EGEPFQTVHP ALPLPWRVEA VEDSAAVAAR IEAFAGTEFD LGRDMPLAVL LLRIAPQRHV
LAICVHHIAF DGFSMKPFFA ELSAAYRLAL GSGAHAMRDV DALAATDRRA PPVPYRRFAQ
RSQRRAAQGS HAAGVAYFAD YLDGIEALNA LPVDRPRRAV AGTAVAATLS RTVSPALLDA
LKTLARSAET TLFCVFYAVL GIALARHTGR QDVVVGVPTA NRTDSDCLDV VGFFANNVVL
RTRVDFAQSF DTFVRAVAEN VQRTFAHHQT PFAFVVDALS PSRSSAHNPI FQIAFAFQNS
PEPGELLSGL HARPLPVANR RAKFDLTINV AFTGDAARID WEYDSSLFLP ATIEALAAHY
LGLLRAATPD APLHRLDPVD ADSPEGALLA RLARAREVTG GASIVSRFDD VAGRRPAAAA
IVHRDGVMTY SALARASEAL AMRLLAARGV ETLDGEPVAF FASRDPATII VELAILKAGG
AYVPIDRSYP PQRVAFVLED SGACLFVKTA GDACAAPPGN LPIVAYDWRA PSEAPAEPAQ
RLPRRQRGDA PAYLMYTSGS TGNPKGVRIP QRGVVRLACP DADSPRFVPL SNETVMLHAS
SPGFDASTFE IWGALLNGGT LVCYASSVVD PRELVEVVAA QGVNTMWLTA GLLSEFAAIE
TRLPHLRWLL TGGDVVPPSA VARLQAREPQ LTVINGYGPT ENTTFTCCHT IERPVDAERA
LPIGTPIPGT SVKIVGTGGF RCGIGEPGEL WTGGGGLADG YHRAPEATRA RFVDDGGRWY
RTGDIVRMRH DGVIDYLGRG DAQVKIRGYR IELEEIERSL HEHPAVSAAA VLVLGDDAQS
KTLAAFVVAG GERDAAGLRA WLGTRLPAYA VPGRWCFVDA LPANVSGKVD RRKLLALAEA
QAPQPEAQTA LSPDESRVAQ VWTRVLGPQA LRPDSDFFDV GGDSLRSIRV AAELGKAWGR
EVPVAALYDH PTLRALTAFL AARDAAPRDR ARPAVFAIPG VGGLAAAFAP LGTELRRHGI
ELVAFDSPGW HADRTLPIDA RLLAYVQHVV DAIRRRTPHG PYQLIGHSFG ARVAFDVALA
LEEAGGTVAL TMLDALPGND LVDMSRWRVG QTPRELAGWL LGAMQNGDVP AEPGEDAVAS
LARLQIYGDL DVHDALALVD DQMLASRRYR PARRLRATRV QMVYAEHGLI GAHAHDAIVD
SLRAWADTVA VARLDADHFS MLKAAPALAG HVMAHGRA
|
|---|
| |