Gene RS03099 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRS03099 
SymbolRSp1444 
ID1223756 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp1813484 
End bp1817599 
Gene Length4116 bp 
Protein Length1371 aa 
Translation table11 
GC content69% 
IMG OID637241307 
Productputative hemagglutinin-related protein 
Protein accessionNP_523003 
Protein GI17549663 
COG category 
COG ID 
TIGRFAM ID[TIGR01901] filamentous haemagglutinin family N-terminal domain 


Plasmid Coverage information

Num covering plasmid clones10 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones14 
Fosmid unclonability p-value0.726072 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGACATT TCCCCACACT CCATAGCGTT GCCCTCATTC CGAGCGGCGC CGCCATCACC 
CGAGCGGCCG TGACCGGACA TGCCAGGCAC CCGCGCGCGC CGGTGCGCAA TGCGTTGGGG
GGCACCGTCC TGCTTGGCAC CTTTGCCGCC GCCATGCCCG CGTTCGCGGC GCCGGCCGGC
GGCACGGTGA CCTCCGGTTC CGGCAGCATC GGACAAAACG GCACCACCAC CACCATCACC
CAGACGTCTT CCCGGCTGGC CATCGATTGG TCCGCCTTCG GCATCCAGGC CGGTGAAACG
GTCAACTTCA TCCAGCCCGG TGCGGGGGCG ATCGCACTGA ATCGCGTCAC CGGCCATGAA
GCCACCAGCA TCCTCGGCAG CCTCAACGCC AACGGTACGG TCTTCATCCT CAATCCGAAC
GGCGTGCTGT TCGGCAGCGG CGCGCAGGTC AATGTCGGCG GCCTCGTCGC CAGCACGCTG
GGACTGAGCA ACGCGGATTT CGAGGCGGGC CGCTATGCCC TGTCGGGCGG CAGCACCGCC
GGCGTCACCA ACCAGGGCAC GATCACCGTC CCCAGCGGCG GCAAGGTCGC GCTGATCGCC
AACAGCGTCG ACAACGCCGG CAACATCAGC GCCCCGAGGG GCAGCGTACT GCTGGCGGGA
GCCGGCAACG TCACGCTCAC GCTCGCCGAT GGCAGCCCAC TCGGCTACAC CATCAGCGCG
GGGGCGGCCC GCACCCTCGT CAACAACGGC GGCATGATCG TCGCGGATGG CGGCCGCGTG
GTGCTCACGG CCCGCGGACT CGACAGCCTG AGCGAATCCG TCGTCAACAC GACCGGCGTG
GTACGGGCGA GAACGGTGGG GAACAACCAG GGCACGATCG AGCTGATCGG CGATCCGGTG
GCGGGCCTGA CCCAGGTGAG CGGCCAGATC GACGCGAGCG CGCCCGACGG CGGCGGCAAC
GGCGGAAGCG TCAAGGTGCT GGGCACCAAG GTCGGTGTAT TCGATGGTGC GCAGATCGAC
GTCAGCGGCA TGGCGGGCGG CGGTACCGCG CTGATCGGCG GCAATGCCCA AGGGGCGGGC
CCCGAGCCCA ATGCCACTGC CACGTATGTC GCCCCGACCG CCGCGATCGA TGCCAGCGCC
ATCCGGCAAG GCAACGGCGG CAGGCTGATC GTCTGGGGAA CGGATGTCGC CAATGTGCAC
GGATCGCTGT CGGCCAACGG CGGCGCGCAG GGCGGCAACG GCGGCCATGT TGAAACCTCG
GGCCATGCGC TGGATACGGA CGGCATCGCC GTCAGCGTGG CCGGCGGCGG CGGCGGCACG
GGCGGCCTGT GGCTGCTGGA TCCGTACAAC GTCACCCTCT CCGCGGGCAC GCAGACCGGC
GGTGCGTTCT CCGGCAACGT GTGGACACCC AGCGCCAGCG GCTCGCTGGT GAACACCTCC
AGCATCCAGA GCCTTCTCAA CAGCGGCGGC AATGTCACCA TCACCACGAC GGGTGCCGGC
ACGCAGGAAG GCAACATCGC GATCAACGGC AGCATCAGCA AGACAGCCGG CGGCAATGCC
AGCCTGACAC TGATCGCCGA CGGACGCATC ACCACCAACG CATCCAGCGG CACGCACCGC
ACCATCACCA GTACGAGCGG CACCCTCGAC GTATCGATGA CGGCGCGCGC GACCACCAGC
GCGGCCAGCA CCAGCGGCAT CAATCTGCGC TACGTGGACA TCAACGCCAA CGGCGGCAAC
ATTTCAGCGA CGGCCAGCGG GGCCCAGTCC GGCACCGCGG CGGCACTCAG TCTCCAGAAC
AGCAGTTGGA GCACAACCGG CGCCGGCAAC ATCAGCCTCT CTGGCACCCT GCCCGACAAC
GGCAACAGCC AGGGCGTCTT TCTGAATGCG AACACGCTCA CCACGGCGTC CGGCTCGATC
ACGGTATCCG GCACCAGCGG CGGCATCGCC ACCATCACGG GCACCAACAG CAACGGGGCA
CCGCTGTTTT CCACCAGCAA CATCGGGGTG TACCTGGCCG GCGGCAATAC CCTGCGGAGC
ACCGGTGGCG GCGCGATCGC GCTCACGGGC ACGGCAACCG GCGCCACCGC CACCTGGGCA
GGCAGCGGCG TAACGCTGAG CGCGCTGGAC TCGCTGTCCA CCAGCGGCGC CGTGACGATC
AGCGGCACGG CCAGCAATCC GGTCTCCAGC ACGTACCGGA ACCAACTGTC CACCGTGAAC
ATCGCGGGCA CCGGCTCGAA CGCCGCCAGC CTGACCGGGG GCACGGTCAC CATCACCGGC
ACCAACAGTG TGGTGGGCAA TGCAAGCAGC ACCAGCAACG GCAACGCGGC CGTCAAGCTC
GACGGCAAGG TCAATCTCAC GGCCACGGCC GGCCCCATCA ACATCGCGGG ATCGAATGCG
GGCGGCGACG GTGTCTGGGG CTCGGGCAGC GGCGCGGTCA CGATGAGTGC GCCGGCTTCA
TCGTCGATCA CGATCAGCGC GCGCTCCCTC GATTCGGTCA GCGGCTACAG CGGGTTCTAT
ATCGGCGGCG GCAGCGCGAC CCTGACGTTT GCAACGGCGG CGCCGGTCAG CATTGCGGCG
GAAAGCCTGG TCGGTGCCCG CAAAGCGTTC TGGAACAAGG GCGGGTTGAC CGTCCCAGGC
AACCTGCGCA TCGTCACGAC CGGCGGCGCC ATTGCCGACG ACACGACCCA TGGCGGGTAT
TTCCACGTCA CCGGCAGCAC CTCGATCGAC AGCAGCGGCG CCGGCAACAC CGTCAGCCTG
ACCAACAGCG GCAACACGTT CGCCGGGGCG CTCTCGCTCA ACGCGGGCGA CACCACGCTG
GCCAGCAGCA CATCGCTAAC GCTGGACAGC TCGACCGTGA ACGGCGCCCT GAACCTGACC
GCGCCCGGCA TCACGCAAAG CGGCGCGGTG TCGGCGGCCG GCACCGCCAC GCTCAATGGC
GGCAACGCGG CCATCACGCT GACCAACGAC GGCAACGCTT TCAATGCCCT GGCCGTGACC
GGCGCCGCAG GGGTGAACGT GGTGAACGCC AACGCACTGA GCGTGACGGG CGTCACGTCG
ACGGGAGCGG TGCGCTTCAC CACCTTGAGC GGCGACCTGG CCACGCGAGG CAACTGGTCG
ATATCGGGCG GCGACCTCAC CCTGTCGGCC GGGGCAGGCA ACACGCGCGG CACGGCGAGC
GGCGGCAACG TGGACAGCCA GGCCACCCTG GCGGTCGACG CCGGCCGCAC CATCACGGTG
TACAGCGGCG CGGTCGGCTC GACCGTGCTT GGCGGCACGC TGGCCGGGCG GGCCGCCGCC
GGCAGCGGCA ACTTCCGCTA CAACCGGCAG GATGGCGATG CACCCGGCGC CGACGGCATC
GGCGATGGAG CGACCTACGT GATGTACCGC GAACGGCCCA CCGTGACCGT GACGCCCACG
GACGCCGCCA ACACCAAGGT GTACGACGGC GGCGGCGCGA GCGACCCCGC ACTCGCCTAC
ACCATCGTCG GCCAGGTCAA CGGCGACAGC GCCACGCAGA TCCTCTCCGG CAGCCTGGCC
CGGGCGGCTG GCCAGAATGC AGGACGCTAT GCCATCTCGC AAGGCACGCT TGCCGACCAG
CTCGGCTACC AGACCGTCCT GGATGTCGGC CACGCCTTCA GCATCACGCC GGCGCCACTG
CTGATCACCG CCAATGGCGC GAGCCGCACG GCCGGCCAGG ACAACCCCGC CTTCAGCGCC
ACCTTTGCCG GCTTCGTGGG CGGCCAGACC GCACAGACCG CCGACCTGCG GGGCACGCTG
CGCTTGCTCA CCAGCGCCGA TGCCGGCTCG CCGGCGGGCA GCTATGCCAT CGTGCCGGAT
GGCATCTCGA GCAACAACTA CAGCATCCGC TACGCCGCCG GCACGCTGTC GGTGCTGCCG
GCCAGCCCCG CCCCGATGGT CGCGGTGCCC GGCGAGCCGT CCTACATGAA TGCCGTGATC
GACATGCAGG CCAGGATTCG CGCGGCAGGG CTGGCCTCGG CGCCGGAGCC GGCGGAGCGC
AGCGCAACGG GATGGCGCAC CACGACAGCC ACGTTCCGAC AGGACGATAC CGCCAGCGAC
AACGTGCCAG GGAATCGCCT GGCCGCGCAG GAATGA
 
Protein sequence
MRHFPTLHSV ALIPSGAAIT RAAVTGHARH PRAPVRNALG GTVLLGTFAA AMPAFAAPAG 
GTVTSGSGSI GQNGTTTTIT QTSSRLAIDW SAFGIQAGET VNFIQPGAGA IALNRVTGHE
ATSILGSLNA NGTVFILNPN GVLFGSGAQV NVGGLVASTL GLSNADFEAG RYALSGGSTA
GVTNQGTITV PSGGKVALIA NSVDNAGNIS APRGSVLLAG AGNVTLTLAD GSPLGYTISA
GAARTLVNNG GMIVADGGRV VLTARGLDSL SESVVNTTGV VRARTVGNNQ GTIELIGDPV
AGLTQVSGQI DASAPDGGGN GGSVKVLGTK VGVFDGAQID VSGMAGGGTA LIGGNAQGAG
PEPNATATYV APTAAIDASA IRQGNGGRLI VWGTDVANVH GSLSANGGAQ GGNGGHVETS
GHALDTDGIA VSVAGGGGGT GGLWLLDPYN VTLSAGTQTG GAFSGNVWTP SASGSLVNTS
SIQSLLNSGG NVTITTTGAG TQEGNIAING SISKTAGGNA SLTLIADGRI TTNASSGTHR
TITSTSGTLD VSMTARATTS AASTSGINLR YVDINANGGN ISATASGAQS GTAAALSLQN
SSWSTTGAGN ISLSGTLPDN GNSQGVFLNA NTLTTASGSI TVSGTSGGIA TITGTNSNGA
PLFSTSNIGV YLAGGNTLRS TGGGAIALTG TATGATATWA GSGVTLSALD SLSTSGAVTI
SGTASNPVSS TYRNQLSTVN IAGTGSNAAS LTGGTVTITG TNSVVGNASS TSNGNAAVKL
DGKVNLTATA GPINIAGSNA GGDGVWGSGS GAVTMSAPAS SSITISARSL DSVSGYSGFY
IGGGSATLTF ATAAPVSIAA ESLVGARKAF WNKGGLTVPG NLRIVTTGGA IADDTTHGGY
FHVTGSTSID SSGAGNTVSL TNSGNTFAGA LSLNAGDTTL ASSTSLTLDS STVNGALNLT
APGITQSGAV SAAGTATLNG GNAAITLTND GNAFNALAVT GAAGVNVVNA NALSVTGVTS
TGAVRFTTLS GDLATRGNWS ISGGDLTLSA GAGNTRGTAS GGNVDSQATL AVDAGRTITV
YSGAVGSTVL GGTLAGRAAA GSGNFRYNRQ DGDAPGADGI GDGATYVMYR ERPTVTVTPT
DAANTKVYDG GGASDPALAY TIVGQVNGDS ATQILSGSLA RAAGQNAGRY AISQGTLADQ
LGYQTVLDVG HAFSITPAPL LITANGASRT AGQDNPAFSA TFAGFVGGQT AQTADLRGTL
RLLTSADAGS PAGSYAIVPD GISSNNYSIR YAAGTLSVLP ASPAPMVAVP GEPSYMNAVI
DMQARIRAAG LASAPEPAER SATGWRTTTA TFRQDDTASD NVPGNRLAAQ E