Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS03099 |
Symbol | RSp1444 |
ID | 1223756 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 1813484 |
End bp | 1817599 |
Gene Length | 4116 bp |
Protein Length | 1371 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637241307 |
Product | putative hemagglutinin-related protein |
Protein accession | NP_523003 |
Protein GI | 17549663 |
COG category | |
COG ID | |
TIGRFAM ID | [TIGR01901] filamentous haemagglutinin family N-terminal domain |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 10 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 14 |
Fosmid unclonability p-value | 0.726072 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGAGACATT TCCCCACACT CCATAGCGTT GCCCTCATTC CGAGCGGCGC CGCCATCACC CGAGCGGCCG TGACCGGACA TGCCAGGCAC CCGCGCGCGC CGGTGCGCAA TGCGTTGGGG GGCACCGTCC TGCTTGGCAC CTTTGCCGCC GCCATGCCCG CGTTCGCGGC GCCGGCCGGC GGCACGGTGA CCTCCGGTTC CGGCAGCATC GGACAAAACG GCACCACCAC CACCATCACC CAGACGTCTT CCCGGCTGGC CATCGATTGG TCCGCCTTCG GCATCCAGGC CGGTGAAACG GTCAACTTCA TCCAGCCCGG TGCGGGGGCG ATCGCACTGA ATCGCGTCAC CGGCCATGAA GCCACCAGCA TCCTCGGCAG CCTCAACGCC AACGGTACGG TCTTCATCCT CAATCCGAAC GGCGTGCTGT TCGGCAGCGG CGCGCAGGTC AATGTCGGCG GCCTCGTCGC CAGCACGCTG GGACTGAGCA ACGCGGATTT CGAGGCGGGC CGCTATGCCC TGTCGGGCGG CAGCACCGCC GGCGTCACCA ACCAGGGCAC GATCACCGTC CCCAGCGGCG GCAAGGTCGC GCTGATCGCC AACAGCGTCG ACAACGCCGG CAACATCAGC GCCCCGAGGG GCAGCGTACT GCTGGCGGGA GCCGGCAACG TCACGCTCAC GCTCGCCGAT GGCAGCCCAC TCGGCTACAC CATCAGCGCG GGGGCGGCCC GCACCCTCGT CAACAACGGC GGCATGATCG TCGCGGATGG CGGCCGCGTG GTGCTCACGG CCCGCGGACT CGACAGCCTG AGCGAATCCG TCGTCAACAC GACCGGCGTG GTACGGGCGA GAACGGTGGG GAACAACCAG GGCACGATCG AGCTGATCGG CGATCCGGTG GCGGGCCTGA CCCAGGTGAG CGGCCAGATC GACGCGAGCG CGCCCGACGG CGGCGGCAAC GGCGGAAGCG TCAAGGTGCT GGGCACCAAG GTCGGTGTAT TCGATGGTGC GCAGATCGAC GTCAGCGGCA TGGCGGGCGG CGGTACCGCG CTGATCGGCG GCAATGCCCA AGGGGCGGGC CCCGAGCCCA ATGCCACTGC CACGTATGTC GCCCCGACCG CCGCGATCGA TGCCAGCGCC ATCCGGCAAG GCAACGGCGG CAGGCTGATC GTCTGGGGAA CGGATGTCGC CAATGTGCAC GGATCGCTGT CGGCCAACGG CGGCGCGCAG GGCGGCAACG GCGGCCATGT TGAAACCTCG GGCCATGCGC TGGATACGGA CGGCATCGCC GTCAGCGTGG CCGGCGGCGG CGGCGGCACG GGCGGCCTGT GGCTGCTGGA TCCGTACAAC GTCACCCTCT CCGCGGGCAC GCAGACCGGC GGTGCGTTCT CCGGCAACGT GTGGACACCC AGCGCCAGCG GCTCGCTGGT GAACACCTCC AGCATCCAGA GCCTTCTCAA CAGCGGCGGC AATGTCACCA TCACCACGAC GGGTGCCGGC ACGCAGGAAG GCAACATCGC GATCAACGGC AGCATCAGCA AGACAGCCGG CGGCAATGCC AGCCTGACAC TGATCGCCGA CGGACGCATC ACCACCAACG CATCCAGCGG CACGCACCGC ACCATCACCA GTACGAGCGG CACCCTCGAC GTATCGATGA CGGCGCGCGC GACCACCAGC GCGGCCAGCA CCAGCGGCAT CAATCTGCGC TACGTGGACA TCAACGCCAA CGGCGGCAAC ATTTCAGCGA CGGCCAGCGG GGCCCAGTCC GGCACCGCGG CGGCACTCAG TCTCCAGAAC AGCAGTTGGA GCACAACCGG CGCCGGCAAC ATCAGCCTCT CTGGCACCCT GCCCGACAAC GGCAACAGCC AGGGCGTCTT TCTGAATGCG AACACGCTCA CCACGGCGTC CGGCTCGATC ACGGTATCCG GCACCAGCGG CGGCATCGCC ACCATCACGG GCACCAACAG CAACGGGGCA CCGCTGTTTT CCACCAGCAA CATCGGGGTG TACCTGGCCG GCGGCAATAC CCTGCGGAGC ACCGGTGGCG GCGCGATCGC GCTCACGGGC ACGGCAACCG GCGCCACCGC CACCTGGGCA GGCAGCGGCG TAACGCTGAG CGCGCTGGAC TCGCTGTCCA CCAGCGGCGC CGTGACGATC AGCGGCACGG CCAGCAATCC GGTCTCCAGC ACGTACCGGA ACCAACTGTC CACCGTGAAC ATCGCGGGCA CCGGCTCGAA CGCCGCCAGC CTGACCGGGG GCACGGTCAC CATCACCGGC ACCAACAGTG TGGTGGGCAA TGCAAGCAGC ACCAGCAACG GCAACGCGGC CGTCAAGCTC GACGGCAAGG TCAATCTCAC GGCCACGGCC GGCCCCATCA ACATCGCGGG ATCGAATGCG GGCGGCGACG GTGTCTGGGG CTCGGGCAGC GGCGCGGTCA CGATGAGTGC GCCGGCTTCA TCGTCGATCA CGATCAGCGC GCGCTCCCTC GATTCGGTCA GCGGCTACAG CGGGTTCTAT ATCGGCGGCG GCAGCGCGAC CCTGACGTTT GCAACGGCGG CGCCGGTCAG CATTGCGGCG GAAAGCCTGG TCGGTGCCCG CAAAGCGTTC TGGAACAAGG GCGGGTTGAC CGTCCCAGGC AACCTGCGCA TCGTCACGAC CGGCGGCGCC ATTGCCGACG ACACGACCCA TGGCGGGTAT TTCCACGTCA CCGGCAGCAC CTCGATCGAC AGCAGCGGCG CCGGCAACAC CGTCAGCCTG ACCAACAGCG GCAACACGTT CGCCGGGGCG CTCTCGCTCA ACGCGGGCGA CACCACGCTG GCCAGCAGCA CATCGCTAAC GCTGGACAGC TCGACCGTGA ACGGCGCCCT GAACCTGACC GCGCCCGGCA TCACGCAAAG CGGCGCGGTG TCGGCGGCCG GCACCGCCAC GCTCAATGGC GGCAACGCGG CCATCACGCT GACCAACGAC GGCAACGCTT TCAATGCCCT GGCCGTGACC GGCGCCGCAG GGGTGAACGT GGTGAACGCC AACGCACTGA GCGTGACGGG CGTCACGTCG ACGGGAGCGG TGCGCTTCAC CACCTTGAGC GGCGACCTGG CCACGCGAGG CAACTGGTCG ATATCGGGCG GCGACCTCAC CCTGTCGGCC GGGGCAGGCA ACACGCGCGG CACGGCGAGC GGCGGCAACG TGGACAGCCA GGCCACCCTG GCGGTCGACG CCGGCCGCAC CATCACGGTG TACAGCGGCG CGGTCGGCTC GACCGTGCTT GGCGGCACGC TGGCCGGGCG GGCCGCCGCC GGCAGCGGCA ACTTCCGCTA CAACCGGCAG GATGGCGATG CACCCGGCGC CGACGGCATC GGCGATGGAG CGACCTACGT GATGTACCGC GAACGGCCCA CCGTGACCGT GACGCCCACG GACGCCGCCA ACACCAAGGT GTACGACGGC GGCGGCGCGA GCGACCCCGC ACTCGCCTAC ACCATCGTCG GCCAGGTCAA CGGCGACAGC GCCACGCAGA TCCTCTCCGG CAGCCTGGCC CGGGCGGCTG GCCAGAATGC AGGACGCTAT GCCATCTCGC AAGGCACGCT TGCCGACCAG CTCGGCTACC AGACCGTCCT GGATGTCGGC CACGCCTTCA GCATCACGCC GGCGCCACTG CTGATCACCG CCAATGGCGC GAGCCGCACG GCCGGCCAGG ACAACCCCGC CTTCAGCGCC ACCTTTGCCG GCTTCGTGGG CGGCCAGACC GCACAGACCG CCGACCTGCG GGGCACGCTG CGCTTGCTCA CCAGCGCCGA TGCCGGCTCG CCGGCGGGCA GCTATGCCAT CGTGCCGGAT GGCATCTCGA GCAACAACTA CAGCATCCGC TACGCCGCCG GCACGCTGTC GGTGCTGCCG GCCAGCCCCG CCCCGATGGT CGCGGTGCCC GGCGAGCCGT CCTACATGAA TGCCGTGATC GACATGCAGG CCAGGATTCG CGCGGCAGGG CTGGCCTCGG CGCCGGAGCC GGCGGAGCGC AGCGCAACGG GATGGCGCAC CACGACAGCC ACGTTCCGAC AGGACGATAC CGCCAGCGAC AACGTGCCAG GGAATCGCCT GGCCGCGCAG GAATGA
|
Protein sequence | MRHFPTLHSV ALIPSGAAIT RAAVTGHARH PRAPVRNALG GTVLLGTFAA AMPAFAAPAG GTVTSGSGSI GQNGTTTTIT QTSSRLAIDW SAFGIQAGET VNFIQPGAGA IALNRVTGHE ATSILGSLNA NGTVFILNPN GVLFGSGAQV NVGGLVASTL GLSNADFEAG RYALSGGSTA GVTNQGTITV PSGGKVALIA NSVDNAGNIS APRGSVLLAG AGNVTLTLAD GSPLGYTISA GAARTLVNNG GMIVADGGRV VLTARGLDSL SESVVNTTGV VRARTVGNNQ GTIELIGDPV AGLTQVSGQI DASAPDGGGN GGSVKVLGTK VGVFDGAQID VSGMAGGGTA LIGGNAQGAG PEPNATATYV APTAAIDASA IRQGNGGRLI VWGTDVANVH GSLSANGGAQ GGNGGHVETS GHALDTDGIA VSVAGGGGGT GGLWLLDPYN VTLSAGTQTG GAFSGNVWTP SASGSLVNTS SIQSLLNSGG NVTITTTGAG TQEGNIAING SISKTAGGNA SLTLIADGRI TTNASSGTHR TITSTSGTLD VSMTARATTS AASTSGINLR YVDINANGGN ISATASGAQS GTAAALSLQN SSWSTTGAGN ISLSGTLPDN GNSQGVFLNA NTLTTASGSI TVSGTSGGIA TITGTNSNGA PLFSTSNIGV YLAGGNTLRS TGGGAIALTG TATGATATWA GSGVTLSALD SLSTSGAVTI SGTASNPVSS TYRNQLSTVN IAGTGSNAAS LTGGTVTITG TNSVVGNASS TSNGNAAVKL DGKVNLTATA GPINIAGSNA GGDGVWGSGS GAVTMSAPAS SSITISARSL DSVSGYSGFY IGGGSATLTF ATAAPVSIAA ESLVGARKAF WNKGGLTVPG NLRIVTTGGA IADDTTHGGY FHVTGSTSID SSGAGNTVSL TNSGNTFAGA LSLNAGDTTL ASSTSLTLDS STVNGALNLT APGITQSGAV SAAGTATLNG GNAAITLTND GNAFNALAVT GAAGVNVVNA NALSVTGVTS TGAVRFTTLS GDLATRGNWS ISGGDLTLSA GAGNTRGTAS GGNVDSQATL AVDAGRTITV YSGAVGSTVL GGTLAGRAAA GSGNFRYNRQ DGDAPGADGI GDGATYVMYR ERPTVTVTPT DAANTKVYDG GGASDPALAY TIVGQVNGDS ATQILSGSLA RAAGQNAGRY AISQGTLADQ LGYQTVLDVG HAFSITPAPL LITANGASRT AGQDNPAFSA TFAGFVGGQT AQTADLRGTL RLLTSADAGS PAGSYAIVPD GISSNNYSIR YAAGTLSVLP ASPAPMVAVP GEPSYMNAVI DMQARIRAAG LASAPEPAER SATGWRTTTA TFRQDDTASD NVPGNRLAAQ E
|
| |