Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS03098 |
Symbol | RSp1445 |
ID | 1223757 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 1817641 |
End bp | 1819311 |
Gene Length | 1671 bp |
Protein Length | 556 aa |
Translation table | 11 |
GC content | 69% |
IMG OID | 637241308 |
Product | activation/secretion signal peptide protein |
Protein accession | NP_523004 |
Protein GI | 17549664 |
COG category | [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG2831] Hemolysin activation/secretion protein |
TIGRFAM ID | |
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Plasmid Coverage information |
Num covering plasmid clones | 12 |
Plasmid unclonability p-value | 0.604865 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.89886 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | GTGCGCACCT ATGCCCGCCT GACCCTGGAG AGTGCGCTGC TGCTTCTGAT GGCACCCGCC GTCTGCGCGG AGCTTCGGCC CGACGCGGGC GACGTCGCAC GCGATACGGC GCCTGCGCAG GTCCTGGGCA TGCCCGCCGG AGGGACGACC CTGCCCGGCA CCGCTGGCGA TCAGGGTGAC GGCAGCGTGC CGCAGGATGC CACCCCCATC CCCGTGCGCC ACGTGCGCGT GACAGGGGCA CGGCTGTATC CGACCGCAGT GCTGGAGGCG CTGGTCGCCG ACCTGAACGG CGGCACGCGC ACGCTGGCGG ACCTGTCGCG CGGCGCGGCG CGCATCACCC GCTTCTATCG CGCGCAGGGC TGGCCGCTGG CAAGCGCCTA TCTGCCGGCC CAGTCGATCC GGGACGGCCA GGTCGAGATT CGCGTCATGG AGGGCACGTT GTCCGGCGTG CGCATCCAGG CCGATCCGCA AAGCCGACTA CGCGCCAGCG TCATCGACGC CCATCTGGCG GCGCTCGAGC ACGATGCGCC GCTCAACCAG GCGCAGGTCG ACCGCGCATT GCTGTTGCTG TCCGATCTGG CCGGCGCCAG CCTGAACGCC AGTCTGGCTG CCGGCGCGCG TCCTGGCCAG ACCGAACTCG TGATCGGCAG CCGGGCCGCC CCGCTGACAA GCGGCCGCCT GGAGGCCGAC AACTACGGTT CGCTCTACAC GGGACGGACC CGCGTTGGCG GAACACTCAA CGTCAACAGC CCCACGGGCC ATGGCGAGCA GATCAGCGCG CGCATGCTGG CGAGCGACGA CCACCTCTAT TACGGCAGAC TGTCCGTGCA GATGCCGCTG GGGAGTCGCG GCCTGAGCAC CGGCGCCGGT TTTACGCACA CGCAGTACGT ACTGGGCTCG GCCTTCACGC AGCTCGATGC GCGCGGGCAG GCGGACATCG CCGAATGGAA CCTGACCTAC CCTTTCGTCC GTAGCGTTGC GCACAACGTG TTTGGACAGT TCAGCGCGGA ACACCGTCGC ATCTCCGACC AGGTGGGTGC CTCCGGCACC GAGACCGGCA AGCGGGCCGA CCACTACAGC GCCAACCTGC TGTACAGCGG CCGCGATGGC GTGGGCGCCG GAGCCGATAC CCAGGCGGCG CTGCGCATCG GAACAGGCAC GCTGGGCATC GATTCGCCCA CCGCCGCGCG CATCGATGCA GTGGGCGCGC AGACGGCCGG CCGCTACAGC ACGCTCAATC TCGATCTGCA GCGCAACCAG AGGCTGGGCG GCCCGTGGGG CCTGCTGCTT GTCCTGCGCG GCCAGGCGGC ATCGCGCAAC CTGGACTCCT ACCAGAAGTT CGTGCTGGGC GGTGCCAATG GCGTGCGTGC CTACCCGGCC GGCGAGGCAG CCGGCGACGA AGGCTGGCTG GCCAGCGGCG AACTGTATTA CGCGGCAAAC CCGTTGTGCA TCCCCAGCGT GTTCTATGAC GCCGGCGGCA TCGGGATCAA CAGGCATCCC TATCTGGCCA CCGCCAACCG GCGTGTGCTG CACGGCTATG GCATTGGCCT GCGAGGCAGT CACCGGACAT TCGACTGGAG TGCCAGTCTC GCCTTCCGGG GTTCCGAACC CACGCAGACG GAACCGGATC GACGTACACG CCTTTGGGTA CGGCTCGGAT GGGCGTTCTA G
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Protein sequence | MRTYARLTLE SALLLLMAPA VCAELRPDAG DVARDTAPAQ VLGMPAGGTT LPGTAGDQGD GSVPQDATPI PVRHVRVTGA RLYPTAVLEA LVADLNGGTR TLADLSRGAA RITRFYRAQG WPLASAYLPA QSIRDGQVEI RVMEGTLSGV RIQADPQSRL RASVIDAHLA ALEHDAPLNQ AQVDRALLLL SDLAGASLNA SLAAGARPGQ TELVIGSRAA PLTSGRLEAD NYGSLYTGRT RVGGTLNVNS PTGHGEQISA RMLASDDHLY YGRLSVQMPL GSRGLSTGAG FTHTQYVLGS AFTQLDARGQ ADIAEWNLTY PFVRSVAHNV FGQFSAEHRR ISDQVGASGT ETGKRADHYS ANLLYSGRDG VGAGADTQAA LRIGTGTLGI DSPTAARIDA VGAQTAGRYS TLNLDLQRNQ RLGGPWGLLL VLRGQAASRN LDSYQKFVLG GANGVRAYPA GEAAGDEGWL ASGELYYAAN PLCIPSVFYD AGGIGINRHP YLATANRRVL HGYGIGLRGS HRTFDWSASL AFRGSEPTQT EPDRRTRLWV RLGWAF
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