| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS03038 |
|---|
| Symbol | RSp1503 |
|---|
| ID | 1223815 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1884433 |
|---|
| End bp | 1885965 |
|---|
| Gene Length | 1533 bp |
|---|
| Protein Length | 510 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637241366 |
|---|
| Product | major anaerobically induced outer membrane transmembrane protein |
|---|
| Protein accession | NP_523062 |
|---|
| Protein GI | 17549722 |
|---|
| COG category | [C] Energy production and conversion
[Q] Secondary metabolites biosynthesis, transport and catabolism |
|---|
| COG ID | [COG2010] Cytochrome c, mono- and diheme variants
[COG2132] Putative multicopper oxidases |
|---|
| TIGRFAM ID | [TIGR02376] nitrite reductase, copper-containing |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.490138 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 10 |
|---|
| Fosmid unclonability p-value | 0.0661846 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGGAGCAGA CGACACACAC CGACCAGCGG GAGAAAAAAA TGAGCTGTCT TCAAGCGGTC
CGCCGTCTGA TGCGCGCGGG CCTGATTTCG GTGACGCTTG GTGTACTGCT GACGAGCGCG
GCGGCCCAGG CAGCCAAGCT TCCCGGCGAT TTCGGTCCGC CGCGCGGCGA GCCCATCCGC
GCGGTGCTCA CGAGTCCGCC CAACGTGCCG CCGCCGATCC ACCGCAACTA TCCGGCCAAG
GTCATCGTGG AGCTGGAAGT GATCGAGAAG GAAATGCCGA TCTCCGAAGG GGTCAGCTAC
ACCTTCTGGA CCTTCGGCGG CACGGTGCCA GGCAGCTTCA TCCGCGTGCG GCAGGGCGAT
ACGGTGGAGT TCCACCTCAA GAACCACCCG GACAGCAAGA TGCCGCACAA CATCGACCTG
CACGGCGTGA CCGGGCCGGG CGGCGGCGCG GCGTCGAGCT TCACCGCGCC GGGCCACGAA
TCGCAGTTCA CCTTCAAGGC CCTCAATGAG GGGGTCTATG TCTACCACTG CGCCACGGCG
CCGGTCGGCA TGCATATCGC CAACGGCATG TATGGCCTGA TCCTGGTCGA ACCGCCGGAA
GGCTTGCCCA AGGTGGACCA CGAGTACTAC GTGATGCAGG GCGATTTCTA TACCACCGGC
AAATACCGCG AGAAGGGCCC GCAGCCGTTC GACATGGAAA AGGCCATCGA CGAGCGCCCG
ACCTACGTGC TCTTCAACGG CGCGGAAGGC GCGCTCACGG GCGACAAGGC GATGCATGCC
AAGACCGGCG AGACGGTGCG CATCTTCGTC GGCAACGGCG GTCCCAACCT GGTGTCGAGC
TTCCACGTGA TCGGCGCCAT CTTCGATCAG GTGCGCTACG AGGGCGGCAC CAATGTGCAG
AAGAATGTGC AGACCACGCT GATCCCCGCG GGCGGCGCGG CTGTCGTGAA GTTCACCGCC
AGGGTGCCCG GCAGCTACGT GCTGGTCGAC CACTCGATTT TCCGCGCCTT CAACAAGGGG
GCGATGGCCA TCCTCAAGAT CGACGGTCCG GAAGACAAGC CGTTGTATTC CGGCAAGGAG
CTCGATGCGG TGTACCTGGG CGACCGTGCC GGCCCCAACC TGTCGGCCGT CACCCGGGCG
GCGCAGGCGT CGGCATCCGG CACGCTGTCG ATGCAGGATC AGGTGCAGGC CGGCCGCGCG
CTGTTCGCGG GGACCTGCTC GGTGTGCCAC CAGAGCAACG GAACGGGGCT GCCCGGCGTG
TTTCCGCCGC TGGCCAAGTC GGACTTCCTG GCGGCGGACC CGAAGCGGGC GGTGAGCATC
GTGCTGCACG GCCTGAACGG CAAGATCAAG GTGAATGGCC AGGAATACGA TTCCGTGATG
CCGCCGATGA CGCAGCTCAA CGATGACGAG GTCGCCAACA TCCTGACCTA TGTGCTCAAC
AGCTGGGACA ACCCGGGCGG CCGCGTCAGC GCGGAAGACG TCAAGACGAT TCGTGCCCAG
CCCGCACCGG CCAAGGCCGT GGCCGAGCAC TGA
|
|---|
| Protein sequence | MEQTTHTDQR EKKMSCLQAV RRLMRAGLIS VTLGVLLTSA AAQAAKLPGD FGPPRGEPIR
AVLTSPPNVP PPIHRNYPAK VIVELEVIEK EMPISEGVSY TFWTFGGTVP GSFIRVRQGD
TVEFHLKNHP DSKMPHNIDL HGVTGPGGGA ASSFTAPGHE SQFTFKALNE GVYVYHCATA
PVGMHIANGM YGLILVEPPE GLPKVDHEYY VMQGDFYTTG KYREKGPQPF DMEKAIDERP
TYVLFNGAEG ALTGDKAMHA KTGETVRIFV GNGGPNLVSS FHVIGAIFDQ VRYEGGTNVQ
KNVQTTLIPA GGAAVVKFTA RVPGSYVLVD HSIFRAFNKG AMAILKIDGP EDKPLYSGKE
LDAVYLGDRA GPNLSAVTRA AQASASGTLS MQDQVQAGRA LFAGTCSVCH QSNGTGLPGV
FPPLAKSDFL AADPKRAVSI VLHGLNGKIK VNGQEYDSVM PPMTQLNDDE VANILTYVLN
SWDNPGGRVS AEDVKTIRAQ PAPAKAVAEH
|
|---|
| |