| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS02376 |
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| Symbol | RSp1039 |
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| ID | 1223351 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1314362 |
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| End bp | 1315819 |
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| Gene Length | 1458 bp |
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| Protein Length | 485 aa |
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| Translation table | 11 |
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| GC content | 73% |
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| IMG OID | 637240904 |
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| Product | putative outer membrane channel lipoprotein transmembrane |
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| Protein accession | NP_522600 |
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| Protein GI | 17549260 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 13 |
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| Plasmid unclonability p-value | 0.664691 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 10 |
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| Fosmid unclonability p-value | 0.0665572 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCTGTGA GCGTGCTGCT CGCCGCGGCA GCGGGCGGCT GTGCCGTCGG CCCTGATTTT
CACCGGCCGG CCGCGCCGGC CGTGGCGGGC TACACGCCCA CGCCGCCAGC GCCGACCGCA
TCGGCACCGG TCGAGGGCGG ACAGGTCCAG CGCCTGGTCG AAGGGCAGGA GGTGGCCGGG
CAGTGGTGGA CGATGTTCGG ATCGGGCGCG CTCAACGCAC TGGTGGAAGC CGCGCTCAAG
GCGAATCCCG ACCTGCAATC GGCCGAGGCG GCGCTGCGCG TGGCGCAGGA GAACCTGGCG
GCGGCGCGCG GGAGCTTCTT CCCGAGCGTG GATGCGCAGA TGGCCTCGAC ACGCCAGAAG
ACCGCCGCGG TGCTGGCCAG CCCCCTGGCC TCGGGCAATC TGCTGTATTC GCTGCACACC
GCGCAGTTGA CGGTGTCCTA CGCGCCCGAT GTGTTCGGCG GCGTGCGCCG GGAGGTCGAG
GCGAGCGCGG CGCAGGCCGA GGTGGCGGCG TTCCAGCGCG AGGCGGCCTA CCTGACGCTG
ACCGCCAACG TGGTTGCCGC CGCGATCCAG GAGGCGTCGC TGCGGGCCCA GGTCCAGGCC
ACGCACGAGG CCGTCGCCGT GGCCTCCAGG CTGCTGGCGG CGGTGCGCAA GCAGCGGCAG
TTGGGGCAGC TCGGCGCCGC GGACGTTGCC GCGCAGGAGT CGGCGCTGGC GCAGATCGAG
GCCACCCTGC CGCCGCTCGA AAAGCAGCTC GCCCTGCAGC GGGATCTGAT CACCGTGCTG
GCCGGCCGCT TCCCCAGCGA GACGATCACG CAGACGTTCG AGCTGGAATC GCTCCAGCTG
CCGCAGGCGC TGCCGCTGAG CTTGCCTTCC CGGCTGGTGG AACAGCGGCC GGACATCCGT
GCGGCCGAGG CCCAGCTCCA CGCGGCGAGC GCGCATATTG GCGTGGCGAC CGCGGCGCGG
CTGCCGAGCA TCACGCTGAG CGCCGATCTC GGAAGCTCCG CGCTCGCGTT CTCGAAGCTG
TTCACCGGGG GCACCGGGTT CTGGGGATTG ACGGGCGGGA TCGCGCAGCC GATCTTCCGC
GGCGGCACGC TGCTGCACCA GCAGCGCGCC GCGGAGGCCG CTTACGACCA GGCCGCCGCG
CAGTGCCGGA GCACGGTACT GACGGCGTTC CAGAGCGTTG CCGATACGCT GCACGCCATC
GACGCCGATG CCAGGGCGCT GCAGGCCGCC AGCCATGCCG CGGACGCCGC CCGCAAGAGC
CTGACGATCG CGCAGCGCCA GTGGACGCTC GGGCTGATCG CGTATCCGGC CGTGTTGCAG
GCCGAGCAGG CTTATCAGCA GTCGCTGGTC AGCCTGGCGC AGGCCCGCGC GGGGCGCCTG
GCGGATTCCG TGGCGCTGCT GCAGGCGCTG GGCGGGGGCT GGTGGAACCG CGCGCCCGCT
GGCGCACGGC AGGACTGA
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| Protein sequence | MAVSVLLAAA AGGCAVGPDF HRPAAPAVAG YTPTPPAPTA SAPVEGGQVQ RLVEGQEVAG
QWWTMFGSGA LNALVEAALK ANPDLQSAEA ALRVAQENLA AARGSFFPSV DAQMASTRQK
TAAVLASPLA SGNLLYSLHT AQLTVSYAPD VFGGVRREVE ASAAQAEVAA FQREAAYLTL
TANVVAAAIQ EASLRAQVQA THEAVAVASR LLAAVRKQRQ LGQLGAADVA AQESALAQIE
ATLPPLEKQL ALQRDLITVL AGRFPSETIT QTFELESLQL PQALPLSLPS RLVEQRPDIR
AAEAQLHAAS AHIGVATAAR LPSITLSADL GSSALAFSKL FTGGTGFWGL TGGIAQPIFR
GGTLLHQQRA AEAAYDQAAA QCRSTVLTAF QSVADTLHAI DADARALQAA SHAADAARKS
LTIAQRQWTL GLIAYPAVLQ AEQAYQQSLV SLAQARAGRL ADSVALLQAL GGGWWNRAPA
GARQD
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