Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS02156 |
Symbol | RSp1599 |
ID | 1223911 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 2006641 |
End bp | 2008092 |
Gene Length | 1452 bp |
Protein Length | 483 aa |
Translation table | 11 |
GC content | 72% |
IMG OID | 637241462 |
Product | putative outer membrane drug efflux lipoprotein |
Protein accession | NP_523158 |
Protein GI | 17549818 |
COG category | [M] Cell wall/membrane/envelope biogenesis [U] Intracellular trafficking, secretion, and vesicular transport |
COG ID | [COG1538] Outer membrane protein |
TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
Num covering plasmid clones | 20 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.910807 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAACACGC CCACGCTGCG CGGCACCGCG CTGGCCGCAT CGCTGACCAC GCTGCTGACT GGATGCTCGC TAGCGCCGCC CTACGCGCGC CCGGCCATGG ACGTGCCCGC CCACTGGCAG ACCGAGGCCC CCTGGCGCGC CGCGCAACCC GCCGACGACG CGCCCAAGGG CCCATGGTGG CAGCGCTTCA ACGATCCGCA GCTCGACCGG CTGATGGAGC AGGCGCTGCA CGAGAACCAG TCGCTGAAGG TGGCGGTGTC CAACCTGGAA CAAGCGCAGG CGCTGACGCG CGTGGCCCGC GCCGGCCTGC TGCCGCAGGT GACGGCTTCG ACCAGCGGCG CGCGCCTGCG CACCTCCGCC GACCGTCCGC TGTCGTCGTA CAGCAGCCCC ACCATGTCGA CCGTGCAGAA CGACTTCGTG GTGCGCGCGG ATGTCAGCTA CGAAGCCGAC CTGTTCGGCC GCGTGCGCGG CAACATCGCC AATGCCGCCG CCAGCGAGGA GCAGGCCGCG GCCAACCTGG AGAATGTCCG CCTGCTGCTG GCCGCGCAGG TCGCCACCAC CTGGTACAGC CTGCGCGAGA CCGATGCCGA GATCGACGTG GTGCAGCAGG GCCTGGCCTT GCAGCGCAAG GCGCTCGATT TCGTCGCCTC GCGCCATCAG GACGGCGTGG CCTCGGGGCT GGATCTGGCG CAACAGCAGG CGCTGGTGGA CAGCACCGCC ACGCAGGCCG AGCTGCTGCA GAAGCAGCGC ACCCAGTACG AGCACGCGCT CGCCACGCTG ATCGGCACGC CGGCGCCGGC CTTCCATATC GCACCGGCGC CGCTCGCCGG GCAGCCGCCC GTCATTCCCG TCGCCCTGCC TTCCGATGTC ATCGAGCGCC GGCCCGACGT GGCCGCCGCG GAACGCGGTG CCGCCGCCGC CAACGCCTCG GTGGGCGTCG CGCGCGCGGC GTTCTTCCCC AGCATCATGC TCAATGGCGG CGCCGGCTGG GAAAGCCGCG ACCTGGCGCT GCTGTTCTCG GCGCCGTCGC TGCTGTGGTC GTTCGGCACG CAGATCGCGC AGACGGTGTT CGACGCCGGC CGCACGCGGG CGCGGGTCGA CTTCGCCAAT GCGGGCTACC AGGGCGCGAT CGCCAACTAC CGGCAGGCCG TACTCGGCGC GCTGCAGGAA GTGGAGGATG GGTTGTCCGG CCTGCAGGCG CTCGATCGCG CCGCGGCGCA GGCGCGCGCG TCGGTGGAGA GCGCGCGCAA GGTGTACGAC ATCGCCAGCG CGCGCTACGA AGGCGGCCTG GCGACTTCGC TCGATGTGAT CGCGGCCCAG CAGTCGCTGC TCAACAACCA GCGCACGGCG GTGCAGATCC TGGGCCAGCA GCTGACGACC AGCGTCTTCC TCGTCAAGGC GGCCGGCGGT GACTGGAGCC ACCCCGCCGA GCCGCCCACG GCCCGGCGCT AG
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Protein sequence | MNTPTLRGTA LAASLTTLLT GCSLAPPYAR PAMDVPAHWQ TEAPWRAAQP ADDAPKGPWW QRFNDPQLDR LMEQALHENQ SLKVAVSNLE QAQALTRVAR AGLLPQVTAS TSGARLRTSA DRPLSSYSSP TMSTVQNDFV VRADVSYEAD LFGRVRGNIA NAAASEEQAA ANLENVRLLL AAQVATTWYS LRETDAEIDV VQQGLALQRK ALDFVASRHQ DGVASGLDLA QQQALVDSTA TQAELLQKQR TQYEHALATL IGTPAPAFHI APAPLAGQPP VIPVALPSDV IERRPDVAAA ERGAAAANAS VGVARAAFFP SIMLNGGAGW ESRDLALLFS APSLLWSFGT QIAQTVFDAG RTRARVDFAN AGYQGAIANY RQAVLGALQE VEDGLSGLQA LDRAAAQARA SVESARKVYD IASARYEGGL ATSLDVIAAQ QSLLNNQRTA VQILGQQLTT SVFLVKAAGG DWSHPAEPPT ARR
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