Gene RS02108 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRS02108 
SymbolRSp1552 
ID1223864 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp1951668 
End bp1953140 
Gene Length1473 bp 
Protein Length490 aa 
Translation table11 
GC content70% 
IMG OID637241415 
Productprotease signal peptide protein 
Protein accessionNP_523111 
Protein GI17549771 
COG category[O] Posttranslational modification, protein turnover, chaperones 
COG ID[COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain 
TIGRFAM ID[TIGR02037] periplasmic serine protease, Do/DeqQ family 


Plasmid Coverage information

Num covering plasmid clones15 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones17 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGACGCGTC AAACCATGGC ACGCAGCGCG GTCGGGCTGG CCGCAGTGCT GGCCGTTGCG 
GGCGGCTATG CCTATCTGCA GAAGGACGTG ATGACGCGCG CGGTGGCCGC GCCGCTGGCG
GCCTCCGCGA CCGCCCAAAC CTCGGCCGCC CCGATGGCGG TGGCCGTGCC GATGGACTTC
TCCGCCATCG TCGAGCGCTA CGGTCCGGCG GTGGTCAACA TCAGTACCAC CGCGCGCGCG
CAGCGCACCT CCATCCAGGG TTTGCCGCCC GGCGTGAGCC CGGACGATCC GTTCGCCGAG
TTCTTCCGGC GCTTCATGCC CCAGGCGCCG CAGCAGCAGG GCGACCAGGT CGTCAAGGGC
CTGGGCTCCG GCTTCATCGT GTCGCCTGAC GGGCTGATCC TGACCAACGC CCACGTGGTC
GACGGCGCGC AGGAAGTCAG CGTCAAGCTG ACCGACCGCC GCGAGTTCAA GGCCAAGGTG
CTGGGGGTGG ACAAGCAATC CGACGTGGCC GTGCTGCGCA TCGCGGCCAG CAACCTGCCG
ACCGTGCAGA TCGGCAGTCC GGCCGGCACC AAGGTGGGCG AGCCGGTGCT GGCGATCGGC
TCGCCGTACG GCTTCGAGAA CACTGTCACC GCGGGCATCG TGAGCGCCAA GTCGCGCTCG
CTGCCGGACG ACACCTACGT GCCGTTCATC CAGACCGACG TGGCCGTCAA TCCCGGCAAC
TCGGGCGGCC CGCTGTTCAA CCAGCGCGGC GAGGTGATCG GCATCAACTC GCAGATCTAC
AGCCAGACCG GCGGCTACCA GGGCCTGTCG TTCGCCGTGC CGATCGACGT GGCGATGAAG
GTGGAGCAGC AGCTGGTGGC CACCGGCAAG GTCACGCGCG GCCGGCTGGG CATTTCGGTG
CAGGAGGTCG ACCAGTCGCT GGCCGATTCC TTCAACCTGC CCAAGCCGGA AGGCGCGCTG
GTCAACGCGG TGGAAAAAGA CGGCCCTGCC GCCAAGGCCG GCCTGCAGCC CGGTGACGTG
ATCCTGCAGA TCGGCGACGT GCACATCGGC CATTCGGGCG ACCTGCCCGA GCAGGTGGCC
GAGATCAAGC CGGGCTCGAC CGTGCCGCTG CAGATCATCC GCCACGGCAA GCCGACCGCG
CTGTCGGTCA CCGTGGGCGA GGCCAAGGAT GCCAAGGTCG CCGCCAATAC GTCCGCCGCG
CCCGACAAGG GCCGCCTGGG CCTGGCCGTG CGCCCGCTGC AGGCGGAAGA AAAGCGCCAG
AGCGGCCTGC CCGGCGGTCT GGTGGTGATG GACTCGAGCG GCCCGGCCGC CAAGGCGGGC
ATCCAGCCGG GCGACGTGAT CCTGTCGCTC AACGGCACGC CGGTGTCGTC GGCGCAGGAA
CTGCGCGCGC TGGTGGATCG CGCCGGCAAG CACGTGGCGC TGCTGGTGCA GCGCGACGAT
GCCAAGATCT TCGTGCCGCT GGACCTGGGC TGA
 
Protein sequence
MTRQTMARSA VGLAAVLAVA GGYAYLQKDV MTRAVAAPLA ASATAQTSAA PMAVAVPMDF 
SAIVERYGPA VVNISTTARA QRTSIQGLPP GVSPDDPFAE FFRRFMPQAP QQQGDQVVKG
LGSGFIVSPD GLILTNAHVV DGAQEVSVKL TDRREFKAKV LGVDKQSDVA VLRIAASNLP
TVQIGSPAGT KVGEPVLAIG SPYGFENTVT AGIVSAKSRS LPDDTYVPFI QTDVAVNPGN
SGGPLFNQRG EVIGINSQIY SQTGGYQGLS FAVPIDVAMK VEQQLVATGK VTRGRLGISV
QEVDQSLADS FNLPKPEGAL VNAVEKDGPA AKAGLQPGDV ILQIGDVHIG HSGDLPEQVA
EIKPGSTVPL QIIRHGKPTA LSVTVGEAKD AKVAANTSAA PDKGRLGLAV RPLQAEEKRQ
SGLPGGLVVM DSSGPAAKAG IQPGDVILSL NGTPVSSAQE LRALVDRAGK HVALLVQRDD
AKIFVPLDLG