| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS02108 |
|---|
| Symbol | RSp1552 |
|---|
| ID | 1223864 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 1951668 |
|---|
| End bp | 1953140 |
|---|
| Gene Length | 1473 bp |
|---|
| Protein Length | 490 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637241415 |
|---|
| Product | protease signal peptide protein |
|---|
| Protein accession | NP_523111 |
|---|
| Protein GI | 17549771 |
|---|
| COG category | [O] Posttranslational modification, protein turnover, chaperones |
|---|
| COG ID | [COG0265] Trypsin-like serine proteases, typically periplasmic, contain C-terminal PDZ domain |
|---|
| TIGRFAM ID | [TIGR02037] periplasmic serine protease, Do/DeqQ family |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 15 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 17 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGACGCGTC AAACCATGGC ACGCAGCGCG GTCGGGCTGG CCGCAGTGCT GGCCGTTGCG
GGCGGCTATG CCTATCTGCA GAAGGACGTG ATGACGCGCG CGGTGGCCGC GCCGCTGGCG
GCCTCCGCGA CCGCCCAAAC CTCGGCCGCC CCGATGGCGG TGGCCGTGCC GATGGACTTC
TCCGCCATCG TCGAGCGCTA CGGTCCGGCG GTGGTCAACA TCAGTACCAC CGCGCGCGCG
CAGCGCACCT CCATCCAGGG TTTGCCGCCC GGCGTGAGCC CGGACGATCC GTTCGCCGAG
TTCTTCCGGC GCTTCATGCC CCAGGCGCCG CAGCAGCAGG GCGACCAGGT CGTCAAGGGC
CTGGGCTCCG GCTTCATCGT GTCGCCTGAC GGGCTGATCC TGACCAACGC CCACGTGGTC
GACGGCGCGC AGGAAGTCAG CGTCAAGCTG ACCGACCGCC GCGAGTTCAA GGCCAAGGTG
CTGGGGGTGG ACAAGCAATC CGACGTGGCC GTGCTGCGCA TCGCGGCCAG CAACCTGCCG
ACCGTGCAGA TCGGCAGTCC GGCCGGCACC AAGGTGGGCG AGCCGGTGCT GGCGATCGGC
TCGCCGTACG GCTTCGAGAA CACTGTCACC GCGGGCATCG TGAGCGCCAA GTCGCGCTCG
CTGCCGGACG ACACCTACGT GCCGTTCATC CAGACCGACG TGGCCGTCAA TCCCGGCAAC
TCGGGCGGCC CGCTGTTCAA CCAGCGCGGC GAGGTGATCG GCATCAACTC GCAGATCTAC
AGCCAGACCG GCGGCTACCA GGGCCTGTCG TTCGCCGTGC CGATCGACGT GGCGATGAAG
GTGGAGCAGC AGCTGGTGGC CACCGGCAAG GTCACGCGCG GCCGGCTGGG CATTTCGGTG
CAGGAGGTCG ACCAGTCGCT GGCCGATTCC TTCAACCTGC CCAAGCCGGA AGGCGCGCTG
GTCAACGCGG TGGAAAAAGA CGGCCCTGCC GCCAAGGCCG GCCTGCAGCC CGGTGACGTG
ATCCTGCAGA TCGGCGACGT GCACATCGGC CATTCGGGCG ACCTGCCCGA GCAGGTGGCC
GAGATCAAGC CGGGCTCGAC CGTGCCGCTG CAGATCATCC GCCACGGCAA GCCGACCGCG
CTGTCGGTCA CCGTGGGCGA GGCCAAGGAT GCCAAGGTCG CCGCCAATAC GTCCGCCGCG
CCCGACAAGG GCCGCCTGGG CCTGGCCGTG CGCCCGCTGC AGGCGGAAGA AAAGCGCCAG
AGCGGCCTGC CCGGCGGTCT GGTGGTGATG GACTCGAGCG GCCCGGCCGC CAAGGCGGGC
ATCCAGCCGG GCGACGTGAT CCTGTCGCTC AACGGCACGC CGGTGTCGTC GGCGCAGGAA
CTGCGCGCGC TGGTGGATCG CGCCGGCAAG CACGTGGCGC TGCTGGTGCA GCGCGACGAT
GCCAAGATCT TCGTGCCGCT GGACCTGGGC TGA
|
|---|
| Protein sequence | MTRQTMARSA VGLAAVLAVA GGYAYLQKDV MTRAVAAPLA ASATAQTSAA PMAVAVPMDF
SAIVERYGPA VVNISTTARA QRTSIQGLPP GVSPDDPFAE FFRRFMPQAP QQQGDQVVKG
LGSGFIVSPD GLILTNAHVV DGAQEVSVKL TDRREFKAKV LGVDKQSDVA VLRIAASNLP
TVQIGSPAGT KVGEPVLAIG SPYGFENTVT AGIVSAKSRS LPDDTYVPFI QTDVAVNPGN
SGGPLFNQRG EVIGINSQIY SQTGGYQGLS FAVPIDVAMK VEQQLVATGK VTRGRLGISV
QEVDQSLADS FNLPKPEGAL VNAVEKDGPA AKAGLQPGDV ILQIGDVHIG HSGDLPEQVA
EIKPGSTVPL QIIRHGKPTA LSVTVGEAKD AKVAANTSAA PDKGRLGLAV RPLQAEEKRQ
SGLPGGLVVM DSSGPAAKAG IQPGDVILSL NGTPVSSAQE LRALVDRAGK HVALLVQRDD
AKIFVPLDLG
|
|---|
| |