| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS02059 |
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| Symbol | RSp1399 |
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| ID | 1223711 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1761476 |
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| End bp | 1762519 |
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| Gene Length | 1044 bp |
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| Protein Length | 347 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637241262 |
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| Product | porin signal peptide protein |
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| Protein accession | NP_522958 |
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| Protein GI | 17549618 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3203] Outer membrane protein (porin) |
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| TIGRFAM ID | [TIGR03304] outer membrane insertion C-terminal signal |
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Plasmid Coverage information |
| Num covering plasmid clones | 3 |
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| Plasmid unclonability p-value | 0.000217082 |
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| Plasmid hitchhiking | Yes |
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| Plasmid clonability | hitchhiker |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.648974 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGCACT GGATGTGCGC CGCGGGCGCC CTGGCATTGG CTGGCACGGC CCACGCGCAG
AGCAGCGTGA CGCTGTACGG CCTGATCGAC ACCAGCGTGC GCTACACCAC GCACGAAAAC
GCCAACGGCT CGGGCAAGTT GCAGATGGCC GAGGGCCTGC TGACCGGCAG CCGGTGGGGC
CTGCGCGCCG ACGAAGACCT GGGCGGCGGC CGCAAGGCCT TCGCGCAGCT GGAGTCCGGG
TTCAGCCCCG ACACCGGCAG CAGCCTGCAG GGCGGACGGC TGTTCGGCCG CACCGCGCTG
GTCGGCCTCA AGGGCGACTG GGGCACCCTC ACGCTGGGCC GCCAGTACAC CGTGGCACAC
GACGTGATGA GCAGCTACGA GGCCATGGCG CTGGCCAACG TCTCCATCGT CGGCTACCAG
GGCGGCAACT ACACCGGCCT GCGCCAGGAC AACCTGCTCA AGTACACCTA CACGCTGGGC
GCGTGGCAGA CCGAGCTCGC CTATACCTTC GGCGAGGTGC CGGGCGCCAC CCGCGCCGGC
TCAACGGCCG CCGCCGCGCT CATCTATGCG CAGGGGCCGT TGATGCTGGC CGGTGTGTTC
CAGCAGTCGC GCGACGTCAC CACCGGCTTC TTCGGCCTGT CGATCCCGGC CAGCCGGCAG
AACGTGTGGT CGGCGGGCGG CACGTACCTG CTCGGCAAGT CGACGCTGTA CTTCGGCTTC
ACCCGCAGCG CGCTCGACAT GGCGGACTAC CGCAACCGCG CCGTCTACAT CGGCGCCAGG
GTGCCGCTCA CGCCGGCGCT GGCCTTCATC ACCACGCTCA CCGCCGACCG CGTCCGGCAC
CAGGGCGACG GCGGCAACCG CTTCACCGGC GCGGCCGCGC TCGACTACAG CCTCTCCAAG
CGCACCGACG TCTACGCCAG TGTCGACTAC ACCTCGGTGC GCGGTGCCTG GGCGACGCTC
GCCTCACAGC CCGGCTTCGC CACGCCCTTG TTCGGCTACA GCAGCCGGCT GGGCGTGATG
GCGGGGCTGC GGCACAAATT CTGA
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| Protein sequence | MKHWMCAAGA LALAGTAHAQ SSVTLYGLID TSVRYTTHEN ANGSGKLQMA EGLLTGSRWG
LRADEDLGGG RKAFAQLESG FSPDTGSSLQ GGRLFGRTAL VGLKGDWGTL TLGRQYTVAH
DVMSSYEAMA LANVSIVGYQ GGNYTGLRQD NLLKYTYTLG AWQTELAYTF GEVPGATRAG
STAAAALIYA QGPLMLAGVF QQSRDVTTGF FGLSIPASRQ NVWSAGGTYL LGKSTLYFGF
TRSALDMADY RNRAVYIGAR VPLTPALAFI TTLTADRVRH QGDGGNRFTG AAALDYSLSK
RTDVYASVDY TSVRGAWATL ASQPGFATPL FGYSSRLGVM AGLRHKF
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