| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01984 |
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| Symbol | RSp0012 |
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| ID | 1222641 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 14151 |
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| End bp | 16847 |
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| Gene Length | 2697 bp |
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| Protein Length | 898 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637239871 |
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| Product | hypothetical protein |
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| Protein accession | NP_521573 |
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| Protein GI | 17548233 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG2199] FOG: GGDEF domain |
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| TIGRFAM ID | [TIGR00229] PAS domain S-box
[TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 11 |
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| Plasmid unclonability p-value | 0.931378 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 23 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAACTCA CCCTGAAGTC GCAGGCGGCG ATCATGGCAA CCGCCATCAG CGAGGCGGTG
GTGGGCCTGT TCGGCTGGTC GCAGCGTGAG CCGATCCGGC GCGAGGTCAT GCGCCAGATC
AAGACCCAGC AGACTGCGCT GGTGCGCGAA TCCGCCAACA ACCTCAGGCA GCGGCTCGAC
ATCTACCTGG GCCTGCTGGA GCGCACCGCC CGGCAGATGA CCACCGTGCA AATCACCAGC
CCCGAGCAGG AGGCCGCGTT CAATGCGTCG ATCGCGCCGG CCGCCGGCCT GTTCGACAGC
GTGTTCCTCG CTACCGCCGA CGGCACGGTG ACCGCGGTGT CGCCGTATCG CGAGGGGGTG
ATCGGCATCA ACATCGCCGA CCGCGACTAT TTCAAGCAGG TGATGGTGGT CGACCAGCCG
ACCATCTCCG CGCCGCTGCG CAACCGCGTC GGCGGCGAGC CGGTGGTCAC GTTCGCCGCG
CCGGTGCACG ACAGGGAGGG CCGCATCATC GGCCTGATCG GCGCGGGGCT GTACCTGCTC
AAGCCCAACT TCCTGGGTGA CCTGCGCGAC ATGCGGATCG GCGAGACCGG CCGCGTCTAC
CTCGTGGAGC GCGGGTCGAG GCCGCTCTTC ATCGTTCATC CGTCCGCCGA CAAGATGCTC
GCGCCGCTCG ATGCGGACCC CGAGATCGCG GCGGCGTTTC ATGCCGATCC CGCCGCGCTG
CCCGATTGGG GCGGCGACGT GGTGACCACC CAGGACGTGA TCGCCACCGG CTGGACCTTG
GCTGCCGTGC TGCCCGGCGA GGAGGCCAGC CGCCAGCTCA ATGCGATGCG CGACCGCTTC
CGCTGGTCGC TGCTGGCGCT GGCCGCGCTG ATCGGGGTGT CGGTGTGGGC GGCGATGCTG
TGGCTGCTGC GTCCGCTGGG CCGGCTGCAT GCGGCCATGA CGCAGTTGTC GGCCACCGAC
CTGCGCGGGA TCCGTCCGGC CGAACTGCCC GGCGCTTCGG CGGAGATCGA AGCCGTCTCG
ACGGCGTTCC GCAAGCTGAT GGACGAAGTC GTGCGGCAGC GCGCCGAACT GGAGGCGGTC
AACGATGCCT CGCCGCTGGG CCTGTTCCGC TGCGACGCGG CCGGCCACAT GGTCTACGCC
AACGAAGCCT GCCGCCGGTT GCTGGGCCTC GCGCATGATG AGGCGATCGC CGGCGCGTGG
CTCGCGCAGC TGCATCCGCA GGACCGCGAG GCCGTCACGG CGGGCTGGGC GGATGCCGTG
GCGCGTGGCG TCGGCCATCG CGCCGAGCTG CGCGTGCTCG TGCCCGGCCA CGGCGAGCGC
CTGCTGGTCG TCAACACCGC GCCGGTGCGC GTGGAGGGCC AGGTCGTCGG CCACGTGGGC
GCGATGGAGG ACATCACCGT GCGCGCCCGC GCCGAGCAGG CCTCGCGTGT GCTGACCCAG
ATTCTCGACT CCACCACCGA CTTCGTCGCC CAGACCGACG GGCAGGGCCG CGTCACCTAT
ATCAACCCGG CGGGGCGCCG CTTCGCGGGC GTCGCGCCGG ATGCCGACGT GCGCGGCCGC
CGCGTCGATG TGTTCTATCC GGACGACACC ATGCAATGGC TGCGCGAGGT GGCCGTGCCG
GCGGCCACGC GCGACGGCGT GTGGATCGGC GAGACCACGG TGTTCGATGC GCAGCGCCGT
GCCGTGCCGA TCAACCACAT GGTCATCGTG CACCGCGACC CGATCGGGCA GATCGAGTAT
TTCTCGTCGA TCATGCGCGA CATCACGCAG GACAAGGCGG CCAAGGAGGC CTTGCAGCGC
AGCCGCGAGA CCCTGCAGAC CGTCACGGAT GCGATGCCCG CGCTCGTCGC CTTCATCGAC
GCGGACGAGC GCTTCCGTTT CCTGAATGCC GCCTACGAAA AGGCGTTCGG CCGGCCCACC
GCCGCCATGC TCGGCCTCGC CGTGCGCGAG GTGCTGGGCG AGGGCGCCTA CGCCATCATG
CGCGGTCCGC TGCGCCGGGC GCTCGCGGGC GAGACGGTCG TCTTCGAGCA CGAGGTGCCC
GACCGGGACC GGTACCGCTG CGAGGAGATC AACTGCATCC CGCAGTTCGA TGCGGCGGGC
CGGGTCGCGG GCGTGCATGC GGTGACGCTC GACATCACCG AGCGCAAGAA GCAGGAGCTG
CGCCTGCGCG CGCTCTCGAC CACCGACCAC CTGACCGGGC TGCTCAACCG CGCGGGCTTC
GAGGCGTGCC TGTCGGCGGC GCTCGCGCGG GCATGCGGCG ATGGGACGGC CGGCGCGCTG
CTGCTGCTTG ACCTGGACGG CTTCAAGGTC GTCAACGATA CGCACGGGCA CGCCGTGGGC
GATGCGCTGC TGCGGCGCTT TGCGCAGCGG CTGGCGCGCA CCGTGCGCCC CGGTGACGGC
GTGGCGCGCT TCGGCGGCGA CGAGTTCGCC GTGATCCTGG AGCGGCTGGC GCGGCCCGAC
GACGCCAGGG CGGTGGCGCG CCACATTCTT GCGGCGTGCA GCCGGCCGTT CCGCCTGGGC
GAGGCCGTGG TGCAGGTCGG CACCAGCATC GGCATCGCCG GCTTCGACGC CGGTACGCCG
GCGCTGAGTG CCGTGTTCGA GGCGGCCGAC GAGGCGCTGT ACGAGGCCAA GTCGCGCGGC
AAGGGGTTGT TCGTCGGCCT CGATGCCGCA CAGTCCGGTG CGTCCGACCC CGCCTGA
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| Protein sequence | MKLTLKSQAA IMATAISEAV VGLFGWSQRE PIRREVMRQI KTQQTALVRE SANNLRQRLD
IYLGLLERTA RQMTTVQITS PEQEAAFNAS IAPAAGLFDS VFLATADGTV TAVSPYREGV
IGINIADRDY FKQVMVVDQP TISAPLRNRV GGEPVVTFAA PVHDREGRII GLIGAGLYLL
KPNFLGDLRD MRIGETGRVY LVERGSRPLF IVHPSADKML APLDADPEIA AAFHADPAAL
PDWGGDVVTT QDVIATGWTL AAVLPGEEAS RQLNAMRDRF RWSLLALAAL IGVSVWAAML
WLLRPLGRLH AAMTQLSATD LRGIRPAELP GASAEIEAVS TAFRKLMDEV VRQRAELEAV
NDASPLGLFR CDAAGHMVYA NEACRRLLGL AHDEAIAGAW LAQLHPQDRE AVTAGWADAV
ARGVGHRAEL RVLVPGHGER LLVVNTAPVR VEGQVVGHVG AMEDITVRAR AEQASRVLTQ
ILDSTTDFVA QTDGQGRVTY INPAGRRFAG VAPDADVRGR RVDVFYPDDT MQWLREVAVP
AATRDGVWIG ETTVFDAQRR AVPINHMVIV HRDPIGQIEY FSSIMRDITQ DKAAKEALQR
SRETLQTVTD AMPALVAFID ADERFRFLNA AYEKAFGRPT AAMLGLAVRE VLGEGAYAIM
RGPLRRALAG ETVVFEHEVP DRDRYRCEEI NCIPQFDAAG RVAGVHAVTL DITERKKQEL
RLRALSTTDH LTGLLNRAGF EACLSAALAR ACGDGTAGAL LLLDLDGFKV VNDTHGHAVG
DALLRRFAQR LARTVRPGDG VARFGGDEFA VILERLARPD DARAVARHIL AACSRPFRLG
EAVVQVGTSI GIAGFDAGTP ALSAVFEAAD EALYEAKSRG KGLFVGLDAA QSGASDPA
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