| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01970 |
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| Symbol | RSp0738 |
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| ID | 1223045 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 926494 |
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| End bp | 929190 |
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| Gene Length | 2697 bp |
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| Protein Length | 898 aa |
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| Translation table | 11 |
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| GC content | 71% |
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| IMG OID | 637240598 |
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| Product | putative VGR-related protein |
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| Protein accession | NP_522299 |
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| Protein GI | 17548959 |
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| COG category | [S] Function unknown |
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| COG ID | [COG3501] Uncharacterized protein conserved in bacteria
[COG4253] Uncharacterized protein conserved in bacteria |
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| TIGRFAM ID | [TIGR01646] Rhs element Vgr protein
[TIGR03361] type VI secretion system Vgr family protein |
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Plasmid Coverage information |
| Num covering plasmid clones | 18 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 12 |
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| Fosmid unclonability p-value | 0.298061 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAAGTCAC CGTTCCCCCT GCCGGCCGCC GTGCCGCAAG CCGTCCTGGG CGCGCTGCTC
GGGCAGCAGA CCCGCCAGAT CACGCTGGAG ACGGCGCTGA CCTCCGACAA CCTGGTGGTG
GAACGCTTCA CGGCGCGCGA GGCGGTGTCG GCATCGTGCG TGCTGCAGGT CGATTGCCTG
AGCCCCCTGG CTAACCTGGA TACCGCCCAG TTGGCTTCGC AGGAGGCCAC GCTGCGCCTG
ATGCTCGCCG ACGGCAGCCG CCGCGCCTGG CACGGCTACG TGACCGACTG CGCGGCCCTC
GGCGGCAACG GCGGGCTGGC GCGCTACCGC CTGCGCATCG GGCCCTGGCT CGACCGCCTG
CACACCCGCC GCGACTGCTT CGTCTACCAG GACAAGACCG CGCTGGAGAT CATCGAAGAC
CTCTTCGCCG ATTACCCCGT CGCCCACTAC AAGCTTGCCG TCAGCCAGCC GTGCGCCAAG
CGCTCGATCT GCTGCCAGTA CCGCGAGACC GACTACGACT TCGTGATGCG CCTGCTGGCC
GAGGAAGGCC TGTCGCTGCG CATCGAGCAC GAGCAGGGCG ACGCACGGCG CGACGGCAGC
GCGCAATCGC GCCACTGCGT GGTCATCTTC GACAACGACG CCGAACGCCC CGCCTGCGCG
CAGCCTGACA TCCGCTTCCA CCGCGTCGAC GCCACCGAGC GCGAGGACGC CATCGAGCGC
TTCTCGCAGA TGCGCACGGT CGGCACCAAC GCCGTGACCG TCTCCTCGTG GAACTACAAG
GCCCTGGCCG CCACCGCCGC CCAGGCCAGC GCCAGCGACC CCGGCGGCGA ACTGCCCGCG
CTCGAAGCGT TCGAGGCCGC CGGCCCCTAT CGCTTTGCCG ATGCCCAGGG CGCCGGCCGC
GCCGCACGCC TGCGCATGCA AGCCCACGAG GGCGCCTACC TGCGCTACCT CGGCCAGGGC
AGCGTACGCC AGCTCGGCCC CGGCCAGCGC TTCACGCTCA CCCAACACTT CGACACCCGC
CACAGCCAAT TCGTCACCCT GTCGGTCGAG CACGAGGCGG CCAACAACCT CGGTGCCGAC
CTCGCCCGGC TGCTCGGCAC CACCGACATC GAATCGGGCC GCTACCGCAA CCGCTTCGTC
GCCGTGCCGG CCGAGGCGCC GATCGTGCCC CCGTACCGCC ACCGCCCCAC CGCCCCCGAA
GGCCAGGCCG CCACGGTGAT CGCCGACGAC GGTGCCCCGC TCACCACCGA CCGTGACCAC
CGCGTGCGCA TCCGCTTCCC GTGGCTGCGC GCGCCGGCGC TCAACGCCTT CGCCGAACCG
GCCGGCAGCG ACCGCTCGCA GGTCACCGCC TGGGTGCGCG TGGCCACCGC CTCGGCCGGC
CCGAACTGGG GCGCGCACCA CCTGCCGCGC GCCGGCACCC AGGTGCTGCT GACCTTCGTC
GACGGCGACA TCGACCGGCC GCTGGTCACC ATGCAGCTGC ACAACGAGCA GGACGCGCTG
CCCTGGCCCG CCGCCGACGC GCCGCTCGGG CAGGCGCTGT CGGGCTGGCA CTCGCCGAGC
CTGGGCGGCG ACGGCTACAA CCAGTGGGTG GTCGACGATC ACCCCGCGCA GCTGCGCATG
CGGCTGGCCA GTTCCACCGC CGGCAGCCAG CTCAACCTCG GCTACGTGGT CTCGCACGGC
CCGACCGGCG GCGAGCGCGG CGACTGGCGC GGCACCGGCG CCGAACTGCG CACCGATGCG
TGGGCGGTGG TGCGCGCTGG CGGCGGCCTG CTGCTCTCGA CCACCGCGCG AGCGCAGGCC
GGCGGCACGC TGCTCGATAT GCACGAGGCG CGCGGCCAAC TCACGGCGGC ACAGCGCACG
GCACAGCGCC TGTCCGACGC GGCGGCCAGC CAGCAGGCGC TGCCGTTGTC GGCCAACGCG
GCCTTCGACC CGCTCACGCA GGCCCTCGAC CCCGCCCAGG ACGGGCACTA CCCGAGCAGC
GTCAACGGCC AGGACGCGAC CCAGCCGAAC CGGGCCCCGG TCGACAAGTT CGCCCAGCCG
CTGCTGGTGA CCGAATCGCC CGCCAGCATC GCCCTGGCCT CGCAGGCCAC CACCACGGTC
TACGCGGGTA GGCACCTGCA CGGCACGGCG CAGGGCGACT GGCACCTGGC CGCCGGCAAC
GTGGTGGCAG CGGCCGCGGC CCGGGGCGTG AGCCTGTTCG CGCAACGCAA CGGCCTGCGC
GCCATCGCCG AGGGCGGGCC GGTCTCGATC CAGGCGCATA CCGATGCGCT CGCGGTGCTG
GCGGACCAGG CCGTCACCGT GATTTCCTCC ACCGAGTCGA TCGAGATCCT GGCGCAGCGC
AACATCGTGC TGCGTGGCGG GGATTCGGTG ATCCGGATGG AGGGCAACGC GATTACGTTC
GAGACGATCA AGCTGAGTGT GAAGGGGGCG GGGCATCCGT TGATTGGGCC GGGTGGACGA
CCTTTCCGCA TCGAGGGGCT ACCAGATAGC CGCGTGAAAC TCTTCGAGCA ACAAATGCGC
GCCATTAACG AGCGCACTGG CGATCCGATA GCAAACCTAC CCTACAAGAT TGTCACCGAA
GGCGGGGATG TTCATTACGG GACAACGGAC ATCGAAGGTA AAACCATTCG CGTCCCAACA
ATTAAATCCG AAAAAGTTAC GGTTTTTTGG GGCGAACTCC CTCCCTATAA ATCATAA
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| Protein sequence | MKSPFPLPAA VPQAVLGALL GQQTRQITLE TALTSDNLVV ERFTAREAVS ASCVLQVDCL
SPLANLDTAQ LASQEATLRL MLADGSRRAW HGYVTDCAAL GGNGGLARYR LRIGPWLDRL
HTRRDCFVYQ DKTALEIIED LFADYPVAHY KLAVSQPCAK RSICCQYRET DYDFVMRLLA
EEGLSLRIEH EQGDARRDGS AQSRHCVVIF DNDAERPACA QPDIRFHRVD ATEREDAIER
FSQMRTVGTN AVTVSSWNYK ALAATAAQAS ASDPGGELPA LEAFEAAGPY RFADAQGAGR
AARLRMQAHE GAYLRYLGQG SVRQLGPGQR FTLTQHFDTR HSQFVTLSVE HEAANNLGAD
LARLLGTTDI ESGRYRNRFV AVPAEAPIVP PYRHRPTAPE GQAATVIADD GAPLTTDRDH
RVRIRFPWLR APALNAFAEP AGSDRSQVTA WVRVATASAG PNWGAHHLPR AGTQVLLTFV
DGDIDRPLVT MQLHNEQDAL PWPAADAPLG QALSGWHSPS LGGDGYNQWV VDDHPAQLRM
RLASSTAGSQ LNLGYVVSHG PTGGERGDWR GTGAELRTDA WAVVRAGGGL LLSTTARAQA
GGTLLDMHEA RGQLTAAQRT AQRLSDAAAS QQALPLSANA AFDPLTQALD PAQDGHYPSS
VNGQDATQPN RAPVDKFAQP LLVTESPASI ALASQATTTV YAGRHLHGTA QGDWHLAAGN
VVAAAAARGV SLFAQRNGLR AIAEGGPVSI QAHTDALAVL ADQAVTVISS TESIEILAQR
NIVLRGGDSV IRMEGNAITF ETIKLSVKGA GHPLIGPGGR PFRIEGLPDS RVKLFEQQMR
AINERTGDPI ANLPYKIVTE GGDVHYGTTD IEGKTIRVPT IKSEKVTVFW GELPPYKS
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