| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01894 |
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| Symbol | RSp0813 |
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| ID | 1223120 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 1023965 |
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| End bp | 1025956 |
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| Gene Length | 1992 bp |
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| Protein Length | 663 aa |
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| Translation table | 11 |
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| GC content | 70% |
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| IMG OID | 637240673 |
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| Product | hypothetical protein |
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| Protein accession | NP_522374 |
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| Protein GI | 17549034 |
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| COG category | [T] Signal transduction mechanisms |
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| COG ID | [COG5001] Predicted signal transduction protein containing a membrane domain, an EAL and a GGDEF domain |
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| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
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Plasmid Coverage information |
| Num covering plasmid clones | 4 |
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| Plasmid unclonability p-value | 0.00344016 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | decreased coverage |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.44222 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATGATGG CTTTCAAGCC CTGGCGGTCC CAGCTCAGTC GCGCTGTCCT GCGGACCAAC
ATGGCGGCCG CGGGCGCGGC GCTGGCCATC GCCGGCGTAC TGCTGATCGC GTTCCAGTTC
GTGGCGCTGC GTGCGGCGCT GGTGCGCGAT GTCCACGTGC AGGCGCGCAT CATCGGCGCC
AACAGCGTGG CGGCGCTGCT GTTCAACGAC CGGCGCGCGG CCGAAGAGAC GCTCGGCGCG
CTGGCCGGTT CGCCGTCGCT GCGCGCGGCC GGCGTGTTCA CCGCGCAGCG CCTGCCGCTC
GGGCTGTACC AGCGCGGCGA AGCGGCACCG GTGCGCTCGC CCGACGCGGC CCTGATGCGC
GACCACGACG AGTCCACCGC GACGCGGCTG GTGGTGGTGG AGCCCATCTT CTCCGAGCGG
CGCGTGATCG GCTACGTCGT CATCCGCTCG AGCCTCGACG ATCTCTACCT GCAACTGCTG
GGCTACGCCG CGCTGACGGT GACGGTCGGG ATCGGCGCCA TGGGGCTGGC CTACCTGGTG
ATCGCCCGCA CGCGGCGGGC CGTGCTGCAG GCCGAGGCGC ATCTCGACTA CCTGGCCCAT
GTCGATTCCG TGACCGACCT GCCCAACCGG CACGCCTTCA ACCAGCGGTT GCGGGAAGCG
CTCGAATCGG CCGGGCAGGC CGGCGCGATC GGGCTGCTGC TGCTGGATCT GGACAACTTC
AAGGTGGTCA ACGACACGCT CGGCCACAAC AACGGCGACC GGCTGCTACG CCAGGTGGCG
CGCCGGCTCA ACGATGTGAT CGAGCAATCC AATGTGCGCG CCGTGCTGTG CCGCATCGGC
GGAGACGAGT TCGCCGTGAT CGCCGAGCTG TCGCGGCGCG CATCGATCAC CAACCCGGAG
GCCGCCGAGC TGTCCAGCGC GCTCGCCAAT CGCATCCTGG CCGCGCTGGC GGCGCCGTTC
GCGCTGGATC TGCACCAGAT CTACGTCACG GCCAGCGTGG GCGTGAGCCT GTATCCGCAT
GATGCCGGCG ACGTGCAGTC GCTCACCCGC AATGCCGATG CGGCGATGTA CTCCGCCAAG
AACCGCGGCA AGAACGCCGC GGCCTGCTTC ACCGCCGAGA TGGACCAGCA GGCGCGCCGC
CGCCTGCGCG TGGAGTCGGA CCTGCGCCGC GCGCTCGAAC ACGAAGAGCT GCTGCTGGTC
TACCAGCCGC AGATCCGCCT GGACGCGCTC GCGCAGGCGG GCGCGCATGT CTGCTCGGCC
CACGTGCATG GCGTGGAGGC CTTGGTGCGC TGGCGGCACC CGGAGATCGG CCTGATCGGT
CCCGGCGAAT TCATCGCCGT GGCCGAAGAG ACCGGCCTGA TCGTGCCGCT GGGCCTGTGG
GTGCTGCGCA CGGCCTGCCA GCAGGCGGCG CAGTGGCTGC ACGCAGGGCG GGCGACGCTG
CGCGTGGCGG TCAACCTGTC GCCGCGGCAG GCGCGCGATC CGGCCCTGGC GGAGAACGTG
CTCGGCATCC TGCGCGAGAC CGGCCTGCCG CCGCACCTGC TCGAGCTGGA GATCACCGAG
AGCGTGCTGA TGGAGGACAT CGACGCCAAC ATCCGGCTGC TCGAAGCCCT GCACGCGGCG
GGGGTCAACC TGTCGATCGA CGATTTCGGC ACCGGGTACT CGTCGCTGGC CTATCTGCAG
CGCTTCCCGA TCCACAAGCT GAAGATCGAC CGCAGCTTCG TGCAGCGCAT GCCCGGCGAC
GGCGAGGCGA TCGCCAGCGC GGTCATCGCC ATGGCGCACA GCCTGCGCAT GCAGGTGGTG
GCCGAAGGCG TGGAGCATGC CGGGCAGCTC GCCTGGCTGC GCGCGGCCGG CTGCGATCTC
GGCCAGGGGT ATCTGTTCTC GCGGCCGCTG CACGCCGAGC AACTGATGTC CTGGCTGCGA
CGTCAGGACA GTGCGGCGCC GCCCTTCGAC GCAGAGATTA TCCCGTCCAC GGAACGCACG
GACGCTTCAT AA
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| Protein sequence | MMMAFKPWRS QLSRAVLRTN MAAAGAALAI AGVLLIAFQF VALRAALVRD VHVQARIIGA
NSVAALLFND RRAAEETLGA LAGSPSLRAA GVFTAQRLPL GLYQRGEAAP VRSPDAALMR
DHDESTATRL VVVEPIFSER RVIGYVVIRS SLDDLYLQLL GYAALTVTVG IGAMGLAYLV
IARTRRAVLQ AEAHLDYLAH VDSVTDLPNR HAFNQRLREA LESAGQAGAI GLLLLDLDNF
KVVNDTLGHN NGDRLLRQVA RRLNDVIEQS NVRAVLCRIG GDEFAVIAEL SRRASITNPE
AAELSSALAN RILAALAAPF ALDLHQIYVT ASVGVSLYPH DAGDVQSLTR NADAAMYSAK
NRGKNAAACF TAEMDQQARR RLRVESDLRR ALEHEELLLV YQPQIRLDAL AQAGAHVCSA
HVHGVEALVR WRHPEIGLIG PGEFIAVAEE TGLIVPLGLW VLRTACQQAA QWLHAGRATL
RVAVNLSPRQ ARDPALAENV LGILRETGLP PHLLELEITE SVLMEDIDAN IRLLEALHAA
GVNLSIDDFG TGYSSLAYLQ RFPIHKLKID RSFVQRMPGD GEAIASAVIA MAHSLRMQVV
AEGVEHAGQL AWLRAAGCDL GQGYLFSRPL HAEQLMSWLR RQDSAAPPFD AEIIPSTERT
DAS
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