| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01889 |
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| Symbol | RSp0818 |
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| ID | 1223125 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 1031318 |
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| End bp | 1034479 |
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| Gene Length | 3162 bp |
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| Protein Length | 1053 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637240678 |
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| Product | drug efflux transmembrane protein |
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| Protein accession | NP_522379 |
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| Protein GI | 17549039 |
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| COG category | [V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01131] ATP synthase subunit 6 (eukaryotes),also subunit A (prokaryotes) |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.43508 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 20 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGGCACGCT ATTTCATCGA CCGCCCCATC TTTGCGTGGG TCCTGGCCAT CATCGTGATG
CTGGCCGGGG CGCTGTCCAT CGCCACGCTG CCGATCGCGC AGTACCCGAG CATCGCGCCG
CCGGCCGTCG CCATCACCGC CACCTACCCC GGCGCATCGG CCAAGACGCT GGAAGACACC
GTCACCCAGA TCATCGAGCA GAAGATGAAG GGGCTGGACC ACCTGAGCTA CATGGCCTCG
ACCAGCGAGT CCTCGGGCAC GGTCACCATC ACCCTGACCT TCGACAACGG CACCGACCCC
GATACCGCCC AGGTGCAGGT GCAGAACAAG CTCGCGCTGG CCACGCCGCT GCTGCCGCAG
GAGGTGCAGC AGCAAGGCGT GCAGGTCACC AAGTCCGCCA CCAACTTCCT GAACGTGCTG
GCGTTCACGT CGGAAGACGG CAGCATGAAC GGCTCCGACC TCTCCGATTA CGTGGCCGCC
AACGTGCAGG ACGCCCTCAG CCGGGTGGAA GGCGTGGGCG ACACCACGCT GTTCGGCTCG
CAGTACGCCA TGCGCATCTG GCTGGACCCG CACAAGCTGT CCAACTTCAG CCTGACGCCG
CTGGACGTGA AGACCGCCAT CCAGGCGCAG AACGCCCAGG TCTCGGCCGG CCAGCTCGGC
GGCATGCCGG CGGCGGACAA CCAGCAGATC AACGCCACCA TCACCTCGCA GACGCGCCTG
AAGACCGCCG AGGCGTTCGG CAACATCCTG CTGCGCACGC AGGCCGACGG CGCCCAGGTG
CGCCTGCGCG ACGTGGCCCG CATCGAGCTG GGCAGCGAGA GCTACAGCAC CGTGGGCCGC
TACAACGGCA AGCCCGCCGC CGGCCTGGCC ATCAAGCTGG CCACCGGCGC CAACGCGCTC
GATACCGTCA AGGCCATCGA TGCCCGCGTG GCCGAGCTGG AGCCCTTCTT CCCGCCCGGC
ATGAAGGTGC AGAAGCCCTA CGACACCACG CCCTTCGTGC GCATCTCGAT CGAGGAGGTG
GTGCGCACGC TGGTCGAGGC GATCGCGCTG GTGTTCCTGG TGATGTACCT GTTCCTGCAG
AACTTCCGCG CCACGCTCAT TCCGACCATC GCCGTGCCCG TGGTGCTGCT GGGCACGTTC
GGCGTGCTGG CCGCGTGCGG CTTCACCATC AACACGCTGA CCATGTTCGC CATGGTGCTG
GCCATCGGCC TGCTGGTCGA CGACGCCATC GTGGTGGTGG AGAACGTGGA ACGGGTGATG
AGCGAAGAGG GCCTGCCGCC CAGGGAAGCC ACGCGCAAAT CCATGGGCCA GATCACCGGC
GCGCTGATCG GCGTGGCGCT GGTGCTGGCC GCCGTGTTCG TGCCGATGGC CTTCTTCAAG
GGCTCCACCG GCGTGATCTA CCGGCAGTTC TCGATCACCA TCGTCTCGGC GATGACGCTG
TCGGTGCTGG TGGCGATGGT GCTGACCCCG GCACTGTGCG CGACGCTGCT CAAGCCCGTC
AGGAAAGGCC ACGCGCAGGC CACGACCGGC TTCTTCGGCT GGTTCAACCG CACCTTCGAC
CGCGGCAACC ATCGCTACCA GGGCATCGTG CGCCACATGC TGGGCAAGCA ACGGCGCTAC
ATGGCCATGT ACGGCGTGCT GTTCGCCATG GTGGTGGTCG GCTTCATGAA GCTGCCGGTC
GGCTTCCTGC CCGACGAAGA CCAGGGCACG CTGTTCGTGC TGGCGCAGCT GCCGCCGGGC
GCCACCAATG CGCGCACCGA AGACGTGCTG CGCCAGGTCG AGCACCACTT CCTGGTGGAC
CAGAAAGAAG CCGTGAGCGG CGTGTTCTCG GTGGCGGGCT TCAGCTTTGC CGGCAGCGGC
CAGAACATGG GCTTTGCCTT CGTCAAGCTG CGCCCGTGGA ACGAGCGCAA GGGCGAGGCG
CTCAGCGTCA GCGGCGTCGT GGCCAGGGCC TTCGGGTTCT TCGCCACCAT CCGCGACGCC
CGGGTCTTCG CCTTCGCCCC GCCGGCCGTG GCGGAGCTGG GCAACGCCAC CGGCTTCGAC
CTGATGCTGC AGGACCGCGC CAACCTCGGC CACGCCGCGC TGATGCAGGC CCGCAACCAG
CTGCTGGGCA CGCTCTCGCA AGACCCGCGC CTGGTGGCCG TCCGCCCCAA CGGCCAGGAA
GACACGCCGG AGTTCCAGTT GCAGATCGAT GCGCACAAGG CGGAAACGCT GGGCCTGTCG
ATCTCCGACA TCAACAGCAC GCTCGCCACC GCGTGGGGCA GCAGCTACGT CAACGACTTC
ATCGACCGGG GCCGCGTCAA GAAGGTCATG CTGCAGGCCG ATGCGCCCTT CCGCATGAAC
CCGGAGGACA TCGACAAATG GTATGTGCGC AACAGCGCCG GCACCATGGT TCCGTTCACC
GCGTTCGCCA GGGTGGACTG GTCCTCGGGC TCGCCGCGGC TGGAGCGCTA CAACGGCGTG
CCATCGATGG AGATCCTGGG CATGGCCAAG CCCGGCAGCG CCTCCAGCGG CGAGGCGCTC
GCCATCGTCG AGGCGGCCGT GACCAAGCTG CCGGCCGGCA TCGGCTACGC GTGGACCGGG
CTGTCGCTGC AGGAGAAGGC CTCCAGCGGG CAGACCACCC TGCTCTACAC GCTGTCGATC
CTGATCGTGT TCCTGTGCCT GGCGGCGCTG TACGAGAGCT GGGCGATCCC CTTCTCGGTC
ATCATGGTGG TGCCGCTCGG CGTGCTGGGC GCGCTGCTCG GCGCCATCCT GACCTGGAAG
ATGAACGACG TGTATTTCCA GGTGGGTCTG CTGACCACCA TCGGCCTGGC ATCCAAGAAC
GCCATCCTGA TCGTCGAATT TGCCAAGGAA CTCAATGCGC AGGGGATGCG CGTGGTCGAG
GCGGCCATGA CGGCGGCACG CATGCGCCTG CGGCCCATCC TGATGACGTC GCTGGCCTTC
ATCCTCGGCG TCGTGCCGAT GGTCACGGGC AGCGGTGCCG GCGCCGGCGC GCAGCACGCG
CTGGGCACGG CGGTCATCGG GGGCATGCTG TCCGGCACCG TTCTCGCCAT CTTCTTCGTG
CCGCTGTTCT TCGTGCTGGT GCGCGGGCTG TTCCGGGCCA GGCCGGCCAC GGCCACGGCC
GCGGCCACCA CCGCGCAACC GGCCGACGCC GCCGCTTCGT AA
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| Protein sequence | MARYFIDRPI FAWVLAIIVM LAGALSIATL PIAQYPSIAP PAVAITATYP GASAKTLEDT
VTQIIEQKMK GLDHLSYMAS TSESSGTVTI TLTFDNGTDP DTAQVQVQNK LALATPLLPQ
EVQQQGVQVT KSATNFLNVL AFTSEDGSMN GSDLSDYVAA NVQDALSRVE GVGDTTLFGS
QYAMRIWLDP HKLSNFSLTP LDVKTAIQAQ NAQVSAGQLG GMPAADNQQI NATITSQTRL
KTAEAFGNIL LRTQADGAQV RLRDVARIEL GSESYSTVGR YNGKPAAGLA IKLATGANAL
DTVKAIDARV AELEPFFPPG MKVQKPYDTT PFVRISIEEV VRTLVEAIAL VFLVMYLFLQ
NFRATLIPTI AVPVVLLGTF GVLAACGFTI NTLTMFAMVL AIGLLVDDAI VVVENVERVM
SEEGLPPREA TRKSMGQITG ALIGVALVLA AVFVPMAFFK GSTGVIYRQF SITIVSAMTL
SVLVAMVLTP ALCATLLKPV RKGHAQATTG FFGWFNRTFD RGNHRYQGIV RHMLGKQRRY
MAMYGVLFAM VVVGFMKLPV GFLPDEDQGT LFVLAQLPPG ATNARTEDVL RQVEHHFLVD
QKEAVSGVFS VAGFSFAGSG QNMGFAFVKL RPWNERKGEA LSVSGVVARA FGFFATIRDA
RVFAFAPPAV AELGNATGFD LMLQDRANLG HAALMQARNQ LLGTLSQDPR LVAVRPNGQE
DTPEFQLQID AHKAETLGLS ISDINSTLAT AWGSSYVNDF IDRGRVKKVM LQADAPFRMN
PEDIDKWYVR NSAGTMVPFT AFARVDWSSG SPRLERYNGV PSMEILGMAK PGSASSGEAL
AIVEAAVTKL PAGIGYAWTG LSLQEKASSG QTTLLYTLSI LIVFLCLAAL YESWAIPFSV
IMVVPLGVLG ALLGAILTWK MNDVYFQVGL LTTIGLASKN AILIVEFAKE LNAQGMRVVE
AAMTAARMRL RPILMTSLAF ILGVVPMVTG SGAGAGAQHA LGTAVIGGML SGTVLAIFFV
PLFFVLVRGL FRARPATATA AATTAQPADA AAS
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