Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS01888 |
Symbol | RSp0819 |
ID | 1223126 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 1034495 |
End bp | 1035724 |
Gene Length | 1230 bp |
Protein Length | 409 aa |
Translation table | 11 |
GC content | 73% |
IMG OID | 637240679 |
Product | drug efflux lipoprotein |
Protein accession | NP_522380 |
Protein GI | 17549040 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG0845] Membrane-fusion protein |
TIGRFAM ID | [TIGR01730] RND family efflux transporter, MFP subunit |
|
|
Plasmid Coverage information |
Num covering plasmid clones | 13 |
Plasmid unclonability p-value | 0.524066 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
| |
Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
| |
Sequence |
Gene sequence | ATGCGCCCCA CGCCGCCCGC CCTCGCCCCT CTTCTTGCCG CGCTTGCCGC CGCCAGCCTG CTGGCCGCCT GCGGCAAGCC GCCGGGTGGC CCGCCGCCAG CGGAGGGCAC GCCGGTGGTC GGCGTGATGA CCGTGCAGCC GCAGCGCGTG ACGCTCGATA CCGAGCTGCC CGGGCGCACG GTCCCCTTCC TGGTCGCCGA TGTCCGGCCC CAGGTCAACG GCATCATCAA GGCCCGCAAA TTCCGCGAAG GCAGCGACGT GAAAGCGGGC GCGGCGCTCT ACCAGATCGA TCCGGCCACC TACCAGGCGG CCTACGACAG CAACGTGGCG GCCCTGGCCA AGGCCCAGGC CAACCTCAAG ACCACGCGCC TGAAGGCCGA GCGCCACAAG GAGCTGGTGG CGATCCAGGC CGTCAGCCGG CAGGACTACG ACGACGCCGC CGCCGCGCTG GCCCAGGGCG AGGCCGACGT GGCCGCCGCC CGCGCCAACG TGGAGACCAG CCGGATCAAC CTGGCCTACG CCCGGGTGGA TGCCCCCATC TCCGGCCGGA TCGGCAGATC CAGCGTGACG CCGGGCGCGC TCGTCACCGC CAACCAGACC ACCTCGCTGG CCACGATCCA GCAGCTCGAC CCCATCTACG TGGACGTGAC CCAGCCCAGC GCCGCACTGC TGCGCCTGCG GCAGGCGATG GCCCGCGGCG ATCTCCAGAA GAGCGGCGCC AACGCGGCCA CCGTGCGGCT GCTGCTGGAA GACGGCAGCG CGTATCCGCT CGAAGGCAAG CTGGAGTTCT CCGACGTGAC GGTGGACCAG AACACCGGCT CCGTGACGCT GCGCGCGGTG TTCCCCAACC CGAGCGCCAT CCTGCTGCCC GGCATGTATG TGCGCGCCGT GCTGCCGGAA GGCGTGAAGG ACGAGGCCCT GCTGGTGCCG CAGCAGGCCG TGGCGCGCGA CAGCACCGGC AAGCCGTTCG CCTACGTGGT GGGCAACGAC CGCAAGCTGC AGCGCCGCAC GCTGGAAACG GAGCGCACCG TGGGTGACCA GTGGCTGGTG CGCAGCGGCC TGCGCATCGG CGACCAACTG GTGGTGGAAG GCCTGCCGCG TGCCGTGCCC GGCGCCGAGG TCAAGACCAC GCCGTGGACG GGCAAGACGG CAACGTCGAA CCCGGCCGCC CCCGCGGCGC CCGCTGTGCG GACGGCCGTC GGGCAGCGCA CCACCGTCGC CGCCAACTGA
|
Protein sequence | MRPTPPALAP LLAALAAASL LAACGKPPGG PPPAEGTPVV GVMTVQPQRV TLDTELPGRT VPFLVADVRP QVNGIIKARK FREGSDVKAG AALYQIDPAT YQAAYDSNVA ALAKAQANLK TTRLKAERHK ELVAIQAVSR QDYDDAAAAL AQGEADVAAA RANVETSRIN LAYARVDAPI SGRIGRSSVT PGALVTANQT TSLATIQQLD PIYVDVTQPS AALLRLRQAM ARGDLQKSGA NAATVRLLLE DGSAYPLEGK LEFSDVTVDQ NTGSVTLRAV FPNPSAILLP GMYVRAVLPE GVKDEALLVP QQAVARDSTG KPFAYVVGND RKLQRRTLET ERTVGDQWLV RSGLRIGDQL VVEGLPRAVP GAEVKTTPWT GKTATSNPAA PAAPAVRTAV GQRTTVAAN
|
| |