| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01780 |
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| Symbol | RSp0669 |
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| ID | 1222976 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 848539 |
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| End bp | 850107 |
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| Gene Length | 1569 bp |
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| Protein Length | 522 aa |
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| Translation table | 11 |
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| GC content | 75% |
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| IMG OID | 637240529 |
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| Product | outer membrane CHANEL lipoprotein |
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| Protein accession | NP_522230 |
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| Protein GI | 17548890 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 19 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGACTCCAA GTCGACCCGC CGGCACCCCG TGGCCTGCCG GTCTTGCGTG CCGCGCGGTG
CCGACGCTGC TGGCGCTTGC GCTGGCGGCC TGCGCGGTCG GTCCGGACTA CCGCGCCCCC
AGGCTCGCCG GCGTGGAAGC GCCCGCCGGC TGGCATGCCA CGCTGCCGCA CCACGGCAGC
CGCATGATGC TGGCCCGCTG GTGGGAGCAG TTCCACGATC CGGCCCTCAC GCAGCTGATC
GAACAGGCCG ATGCCGACAG CCCCACGCTG GCGCAGGCCG TGGGCCGCGT GCGCGAGGCC
CGCGCGTCGG TGTCGAGCAG CCGGGCGGCG CTGTTCCCGC AACTGAAGGG CAGCGGCTCG
GCCGTGCGGC AGGGCGGGTT CGGCGGCAGC CAGGTCCTCG GCGGGGCCGC AGGCACGGGC
GTGTCGGCCA CCAGCGTCAG CCCGACGCTG GGGCTCGGCA CCTTCACCAC GCTGGCGGCC
ACGTCCGATG TATCGTGGGA GCTCGACCTG TTCGGCGGCA AGCGGCGCAG TCTGGAGGGC
GCCGATGCGC GCCTCGACGC CAGCCTTGCC GATTGGCACG ATGCCCGCGT GACGCTGTCG
GCCGAGGTTG CCAGCACGTA TCTGCAGCAG CGCGAATGCG AGGCGCTGGT CGCCATCGGC
GAGACCACGC TGGCCTCGCG CCAGGAGACC CTGCAGCTGA CCGAGCGCAA GTTCGGCGCC
GGGTTTGTCG CGCCCGCCGA TCTGGCGCAG GCGCAGGCCA CCGTGGCCGA TGCGACCAAC
GCGCTGGAGA GCCAGCGGGC CCAGTGCGCC CAGGGCCTCG ACCGGCTGGT GACGCTCATC
GGCCTGGACC ACGCGGCGCT CGCGGCCCTG CTGGCGTCCG GCACGGGGCG GATGCCCGCG
CCGCCCGATG CCGCTGTGCC CGATGTGCCC GCGCAGGTCC TGTCGCAGCG GCCCGACGTG
TCGTCGGCCG AGCGCGCGGT GGCGCTCGCC AGCGCGGACA TCGGCGTGGC GGTGGCGAGC
CGTCTGCCGT CGCTGACGCT GGCGGGGTCG ATCGGCATCA ATACGTTCCG CATCAGCGGG
CAGTCGCTGA CCAGCAAGTC GTGGTCGTTC GGGCCGTCGG TGTCGTTGCC CATCTTCGAT
GGCGGGAGCG GCGCCGCGCG GGTGGAGACC GCCCGCGCCC GCTACGACCA GGCGCTGGCC
GGCTACCGCG CCAAGGTGCG CCAGGCCGCG CAGGAGGTCG AGGACGCGCT GGTCCGCCTC
GATGCCGCCG GCCGCCGCCT CGATGCCGCC GCCGTCGCCG ATGCGCAGTA CGCCAAGGTG
CTGCAGGCGG CCAGCGCCCG CTACCGTCTC GGCGCCGGCA GCCTGCTGCA GCTCGAAGAT
GTGCGGCGGA CCACGCTGTC GGCGTCGCAA TCGCTGGCGG CGGTGCGGCT CGAGCGCGCG
CAGGCGTGGG TCGCGCTGTA CAAGGCCGTC GGCGGCGGAT GGCGCGAGGA CGCCGCGCCC
GCCGATGCCG CTTCTTCTGT TCCCGCGCCG GCCGCAGAGC GCCGGGCGCC CATCGGAAAC
GCTTCATGA
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| Protein sequence | MTPSRPAGTP WPAGLACRAV PTLLALALAA CAVGPDYRAP RLAGVEAPAG WHATLPHHGS
RMMLARWWEQ FHDPALTQLI EQADADSPTL AQAVGRVREA RASVSSSRAA LFPQLKGSGS
AVRQGGFGGS QVLGGAAGTG VSATSVSPTL GLGTFTTLAA TSDVSWELDL FGGKRRSLEG
ADARLDASLA DWHDARVTLS AEVASTYLQQ RECEALVAIG ETTLASRQET LQLTERKFGA
GFVAPADLAQ AQATVADATN ALESQRAQCA QGLDRLVTLI GLDHAALAAL LASGTGRMPA
PPDAAVPDVP AQVLSQRPDV SSAERAVALA SADIGVAVAS RLPSLTLAGS IGINTFRISG
QSLTSKSWSF GPSVSLPIFD GGSGAARVET ARARYDQALA GYRAKVRQAA QEVEDALVRL
DAAGRRLDAA AVADAQYAKV LQAASARYRL GAGSLLQLED VRRTTLSASQ SLAAVRLERA
QAWVALYKAV GGGWREDAAP ADAASSVPAP AAERRAPIGN AS
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