| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS01779 |
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| Symbol | RSp0670 |
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| ID | 1222977 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 850104 |
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| End bp | 854321 |
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| Gene Length | 4218 bp |
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| Protein Length | 1405 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637240530 |
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| Product | transporter lipoprotein transmembrane |
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| Protein accession | NP_522231 |
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| Protein GI | 17548891 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[V] Defense mechanisms |
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| COG ID | [COG0841] Cation/multidrug efflux pump
[COG0845] Membrane-fusion protein |
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| TIGRFAM ID | [TIGR00915] The (Largely Gram-negative Bacterial) Hydrophobe/Amphiphile Efflux-1 (HAE1) Family
[TIGR01730] RND family efflux transporter, MFP subunit |
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Plasmid Coverage information |
| Num covering plasmid clones | 12 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 15 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGATCGGAC TTCGTGTGTG GATGGCCGGG CTCGTCCCGG TGATGGCCTG TGTGCTGGCC
GCGTGCGGCC GGCATCCCGC CGACGCGCAG GCAGCCAATG CCAAGCCGGC GCTGACAGTC
GACGTCGTGC GGCTGAACCA GCGGGTGTGG CCGCGCGCGG TCACGGCCAG CGGCGCGGTG
CAGGCCTGGC AGGAAGCCAG CATCGGCGCG GAGGTGAGCG GCCTGAAGCT GGCCGATGTG
CTGGTCAACG TGGGCGACGT GGTCAGGCAG GGGCAACTGC TGGCGCGTCT GTCGGACGAA
ACCGTGCGCA CCGACCTGGC CGCGCAGCGC GCCGCGCTGG CCGAAGCCGA GGCCGCCGCC
GCGCAGGCCG CAGGCGAAGC GCACCGCGCG CACGAACTCG ACAAGAGCGG CGCGATCAGC
CAGCAGGAAC TGATCCAGTA CGACACCCAG GCCAAGACCG CGGCGGCCAA GCTGGCCTCG
GCGCGCGCGC AGTTCGACAG CCAGCAGATC CGCCTGCGCT ACACGCGCGT GCTGGCGCCG
GACGACGGCG TGATCAGCGC GCGCTCGGCG ACGGTGGGCG CGGTGGTCTC GGCCGGCACC
GAGCTGTTCA AGCTGATCCG CAAGAACCGC CTCGAATGGC GCGCCGAAGT GCACGGCGAC
CTGCTGCCGG GCATCCGCCC CGGGCAGGCG GCGCGGCTGC GCCGCATGGA CGGCGGCACC
GTGGCCGGGC GCGTGCGCCA GATCGCGCCC ACGGTGGACG CCAGCACGCG CAACGGCCTG
GTCTACATCG ATCTGCCGGC CGAGGCGGGC GGCCCGGGCG GGGTCAAGGC CGGCATGTAC
CTGTCCGGCG AGATTCTGCT GGGCGACGCG CCCGCCGCGA CCTTGCCGGA GACGGCCGTC
TTCTCGCGCG ACGGCTATGA CTACGCCATG GTGCTCGGCG CGCACGACCA CGTGCGCCAG
GTCAAGGTCG CGGTGGGCCG GCGCCAGGAC GGCCAGGTCG AGGTGACGCA GGGCATCGGC
CCGGCCGACG CCGTGGTCGC CATCGGGCGC GGCCTTCCTG AACGACGGCG ATGCGGTGCG
CCTGGCGGGC CCCGGCGAGG CGGCGTCCGC GCCGGCGGGG GCGGCGCGAT GAACTTCTCC
GCCTGGGCCA TCCGCAAGCC CATTCCGTCG ATCCTGCTGT TCATCCTGAT CACGGTGGCG
GGGCTGGTGT CGTTCCGGAT GCTGTCGATC CAGAATTTTC CGGACATCGA TTTTCCGGCG
GTGTCCGTCA CCGCCACGCT GCCGGGTGCG ACGCCGTCGC AGATGGAGAC CGAGGTCACG
CGCAAGGTCG AGGACAGCAT CGCCAGCATC GGTGCGATCA AGCACATCAG CTCCACCATC
AACGACGGCA GTTCGACCAC GATGGTCGAG TTCCAGCTGG AGAAGGACGT GCAGGAGGCC
GTCAACGATG TGCGCGACGC GGTGAGCCGC ATCCGCGCGC AGCTGCCGTC CGACGTGCAG
GAGCCGGTGA TCTCGCGCGT GACGTTCGCT TCCATGCCCG TGCTGACCTA CGCGGTGCAA
GCCACCGGCA TGGACGCCGA AGACCTGTCC TGGTACGTCG ACAACACCGT CAACAAGCGG
CTGCTGTCGG TGCGCGGCGT GGCCAAGGTG ACCCGCCAGG GCGGCGCGGA CCGCGAGGTG
CGCGTGCAGC TCGATCCGGT CCGGCTGCAG GCGCTGAACG TCACGGCGGC GGAGATCAGC
GTGCAGCTGC GCGGCATGCA GCAAGAGGCG CCGGGCGGGC GCGGCAACAT CGGTGGGCAG
GAGCAGGCGG TGCGCACGCT CGGCACCGTC AAGAGCGCGG CCGAGCTGGC GCGGATGGAC
ATCCCGCTGT CCGACGGGCG GCGCATCCGC CTGTCGGACG TGGCCGACGT GCGCGACACC
GCCGCCGAGC CGCGCCAGAT GGCGCTGCTG GAAGGCAAGC CGGTGGTCAG CTTCCAGGTG
TTCCGCTCGC GCGGCGCGAG CGAGATTTCG GTGGCGCAGG ACGTGCGCGC TGCCATCGCC
GGGCTGCAGG CCGAACGCCC CAACGTGCGC GTGACCGAGG TCTACAACCT GGTCAAGCCG
GTCTCGGACG CCTATCGCGC ATCGATGCAC GCGCTGTACG AGGGCGCCAT CCTCGCCGTG
CTGGTGGTGT GGCTGTTCCT GCGCGACTGG CGCGCGACGT TCGTCTCGGC CGTGGCGCTG
CCGCTGTCGA TCATCCCCAC CTTCGCGGCC ATGCAGATGC TGGGCTTCAC GCTCAACGGC
GTCACGCTGC TGGCGCTCAC GCTGGTGGTC GGCATCCTGG TCGACGATGC CATCGTGGAG
GTCGAGAACA TCGTGCGCCA CCTGCGCAAC GGCAAGCCGC CGTTCGAGGC GGCGATGGAG
GCCGCCCAGG AGATCGGGCT GGCGGTGATC GCCACGTCGC TGACGCTGGT GGCGGTGTTC
TTGCCCACGG CCTTCATGGG CGGCATCTCG GGCAAGTTCT TCCGGCAGTT CGGGTGGACG
GCCTCGATCG CGGTGCTGGC CTCGCTGCTG GTGGCGCGCC TGCTGACGCC GATGATGGCG
GCGTACCTGC TCAAGCCCCA GCGCGAGGGC AACCGCGACG GCTGGATCAT GACGCGCTAT
CTGCGGGCCG CGCGCTGGTG CCTGGCGCAT CCGTGGCGGA CCAGCGGCAT GGCGGCGGCA
TTCCTCGCGG CGTCGGTGGC CATCATCGGG CTGATCCCGG CGACCTTCCT GCCGCCGGAA
GACTGGGCAC AGCTGCAGAT GACGGTGGAG ATGCCGCCCG GCAGCACCAT CGCCCAGACG
CGCGAAGCGA CCGAGCGCGT GCGCCAGGTG GTCCGGACGC ACAAGGACGT GCGCCAGGTC
TACACCGCCA TCGGCTCAGG CGTCATGGCC GGCGTGCCGG GCTCCAGCGG CGGCGAGGTG
CGCACCGGCA CCCTGACGAT CTCGCTCACC GGCCGGCACG AGCGGCACAT CAGCCAGCAG
CAGGTGCAGC GCGAACTGCG CGAGCGGCTG GAGAGCGTGC CCGGCGTGCG GATCGCCTTC
GGCGCCGTGG GTTCGGGCGA GCAGCTGCAG ATCGTGCTGA CCGGCGATGA TCCGGCCACG
CTGCAGGCGG CCGCGCGCGA CGTGATGCGC GACCTGCGCA GCGTGCCCGG CCTGGGCGCG
ATCACCTCGT CGGCGAGCCT GCTGCGGCCC GAGATCGTGA TCCGTCCGGA TTTTGCCCGC
GCGGCGCAGC AGGGCGTGAC GGCGGCGGCG ATCGGGCAGG CCGTGCGCGT GGCCACGGCG
GGCGACTACG ACGTCAACCT GCCCAAGCTG AACCTGCCGG AGCGCCAGGT CTACATCCGC
GTGGAGCTGG ACCCGGCGGC GCGCCACCAG ATCGACACGA TCCGCCAGCT GCGCGTGCCC
GGCCGCAACG GCGCGGTGCC GCTGGAGAAC ATCGCGGACA TCGCCCTGTC CAGCGGCCCG
GCGCAGATCG ACCGCTTCGA CCGCAGCCGC AACGTCACCA TCAGCGTGGG GCTGGAGGGC
GGCGCGCTGG GCGAGGTGAA CCAGGCGGTG GAGGCGCTGC CCTCCGTCCG GAAGCTGCCG
CCCGGCGTGC ACCGCATCGC CTCCGGCGAC GTGGAGGGCA TGCAGGAGCT GTTCGGCGGC
TTCCTGCTGG CGATGTTCGC GGGCGTGCTG TGCGTCTATG CCGTGCTGGT GCTGCTGTTC
CACGACTTCA CGCAGCCGGT GACGATCCTG GCCGCGCTGC CGCTGTCGGT GGGCGGCGCA
TTCGGCCTGC TGGCGCTGTT CGGCTTCAGC CTGTCGCTGC CGGCGCTGAT CGGCCTGCTG
ATGCTGATGG GCATCGTCAC CAAGAACTCG ATCCTGCTGG TGGAGTACGC CATCGTGGCG
CGGCGCGACT TCGGCATGTC GCGCACCGAG GCCCTCATCG ACGCGTGCCA CAAGCGCGCC
CGCCCGATCG TGATGACCAC GGTGGCCATG ACCGCCGGCA TGGTGCCGAT GGCGCTCGGC
CTGGAAGGCG ACGCGGGCTT CCGCGCGCCG ATGGCGGTGG CGGTGATCGG CGGGCTGCTG
ACCTCGACGC TGCTGAGCCT GCTGGTGGTG CCGGTGGTGT TCGAGAAGGT CGACGACCTC
AAGGTCTGGG TGCTGCGCAA GCTGCCCGGC GCGCACCACC GCCAGGCCGG GACGCAGGCT
TCGCCGCCGC AGGTGTAG
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| Protein sequence | MIGLRVWMAG LVPVMACVLA ACGRHPADAQ AANAKPALTV DVVRLNQRVW PRAVTASGAV
QAWQEASIGA EVSGLKLADV LVNVGDVVRQ GQLLARLSDE TVRTDLAAQR AALAEAEAAA
AQAAGEAHRA HELDKSGAIS QQELIQYDTQ AKTAAAKLAS ARAQFDSQQI RLRYTRVLAP
DDGVISARSA TVGAVVSAGT ELFKLIRKNR LEWRAEVHGD LLPGIRPGQA ARLRRMDGGT
VAGRVRQIAP TVDASTRNGL VYIDLPAEAG GPGGVKAGMY LSGEILLGDA PAATLPETAV
FSRDGYDYAM VLGAHDHVRQ VKVAVGRRQD GQVEVTQGIG PADAVVAIGR GLPERRRCGA
PGGPRRGGVR AGGGGAMNFS AWAIRKPIPS ILLFILITVA GLVSFRMLSI QNFPDIDFPA
VSVTATLPGA TPSQMETEVT RKVEDSIASI GAIKHISSTI NDGSSTTMVE FQLEKDVQEA
VNDVRDAVSR IRAQLPSDVQ EPVISRVTFA SMPVLTYAVQ ATGMDAEDLS WYVDNTVNKR
LLSVRGVAKV TRQGGADREV RVQLDPVRLQ ALNVTAAEIS VQLRGMQQEA PGGRGNIGGQ
EQAVRTLGTV KSAAELARMD IPLSDGRRIR LSDVADVRDT AAEPRQMALL EGKPVVSFQV
FRSRGASEIS VAQDVRAAIA GLQAERPNVR VTEVYNLVKP VSDAYRASMH ALYEGAILAV
LVVWLFLRDW RATFVSAVAL PLSIIPTFAA MQMLGFTLNG VTLLALTLVV GILVDDAIVE
VENIVRHLRN GKPPFEAAME AAQEIGLAVI ATSLTLVAVF LPTAFMGGIS GKFFRQFGWT
ASIAVLASLL VARLLTPMMA AYLLKPQREG NRDGWIMTRY LRAARWCLAH PWRTSGMAAA
FLAASVAIIG LIPATFLPPE DWAQLQMTVE MPPGSTIAQT REATERVRQV VRTHKDVRQV
YTAIGSGVMA GVPGSSGGEV RTGTLTISLT GRHERHISQQ QVQRELRERL ESVPGVRIAF
GAVGSGEQLQ IVLTGDDPAT LQAAARDVMR DLRSVPGLGA ITSSASLLRP EIVIRPDFAR
AAQQGVTAAA IGQAVRVATA GDYDVNLPKL NLPERQVYIR VELDPAARHQ IDTIRQLRVP
GRNGAVPLEN IADIALSSGP AQIDRFDRSR NVTISVGLEG GALGEVNQAV EALPSVRKLP
PGVHRIASGD VEGMQELFGG FLLAMFAGVL CVYAVLVLLF HDFTQPVTIL AALPLSVGGA
FGLLALFGFS LSLPALIGLL MLMGIVTKNS ILLVEYAIVA RRDFGMSRTE ALIDACHKRA
RPIVMTTVAM TAGMVPMALG LEGDAGFRAP MAVAVIGGLL TSTLLSLLVV PVVFEKVDDL
KVWVLRKLPG AHHRQAGTQA SPPQV
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