| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00947 |
|---|
| Symbol | RSp0459 |
|---|
| ID | 1222766 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 574686 |
|---|
| End bp | 576185 |
|---|
| Gene Length | 1500 bp |
|---|
| Protein Length | 499 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 65% |
|---|
| IMG OID | 637240319 |
|---|
| Product | putative RHS-related protein |
|---|
| Protein accession | NP_522020 |
|---|
| Protein GI | 17548680 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.55464 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCTGAACT CGATCACCGA TGCCAGTGGC ACGGTGACAG GCTGGCAATA CACGGTGGTC
GATACGGGGG CGGTGGAGAC CTACGACACC AGCGGCAGGC TGCAATCCGT CCGCGACCGC
AATGGCCGCA CCACGACGCT TTCCTACAAC GCCGCCAATC AACTGACGAC GGTCACTGCC
CCGAGCGGGC GCAGCCTGAG CTTCGCCTAC GACAGCCAGA ACCGTGTGGC GAGCGTGACC
GCGCCGGACG GCGCTATCAC CAGCTACGGC TACAACAGCG CCAGCATGCT GTCGAGCGTC
ACCCGGCCAG ACGGCACGAC TCGCCAGTAC GTCTATGAGG ACAGCCGCTT CCCCACCGCC
CTGACCGGCG TCATCGACGA GAACGGCAAC CGCTACGCCA CCTATGCGTA CGACGACCAG
GGCCGTGCCA TCAGCAGCAC ACTGGCCGGT GGTGCGAACC AGTACCAGTT CCAATACGGC
GACAACTACC AGACCACCGT TACCGACCCG ACCGGCAAGA CCAGCGTCTA CACGTTCCTC
AAGCAGAACG GCGTGCTGCT GCCGACCGCG ATCAGCGCGC CCTGTGGCCT CTGTGGGAGC
ACCCGCCAAA GCAGCAGCTA CGACGCCAAC AACAACCTGA TCCAGGAAAC CGACTACAAC
AGCACGGTCA CCAGCCACGC CTACGACAGC CAGAAGCGCG AGACCCAGCG CGTGGAAGGC
GCAGGTACGG CCAGCGCCCG CACCACCACC ACCGTGTGGC ATCCGCAGTT CTGGAACCTG
CCCACGCAGA TCGCCTCGCC GACCAAGCTG GAAACGTACA GCTACGACAG CAACGGCAAC
CTGACCCGCT ACAGCGAAAC GCCGACCGCT GACAGCGACG GCAGCCAAGG CTTCAACGCG
TCGACTGCCG GCTCGGCTCG AACTACCAAC TGGACCTACA CCGCCGACGG CCAGTTGGCG
ACCAGCAGCG GCCCACGCAC TGACGTGGCC TCCAGTACCA CCTACGTCTA CCGCACGACG
GATGACACCA ACGCGCCGCC GCTGTACCGC AAGGGCGACC TGTACCAGAT TATTGATCCA
CTGGGGCATA CCACCACGAT CAACCAGTAC GACGCCAGCG GCCGTCCGCT GCAGACGACG
GACGCCAACG GCACCGTCAC CGCGTTCACG TATTCGAACC GCGGCTGGCT GACCAGCCAG
ACCATCACCC TGGCAAGCGG GACGGGCCAG ACCACCAACT ACGGCTATGA CGCGGTGGGC
CAGTTGACCA AGGTGACGCT GCCGGACAGC AGCAGTGTCA GCTTCAGCTA TGACGGCGCG
CATCGTATGA CGGGCGCAGC CGACAGCCAG GGCAACAGCA TCCGCTACAC GCTGGATGCG
ATGGGCAACC GCACCCAGGA GCAGGCGAAG GACCCGAGCG GCAATCTCGC CCGCCAGGTC
ACCCGTGTCT TCGATTCGAT GAACCGGCCG CTCAAGGTCA CGGTCGGCAC CGCGCAGTAA
|
|---|
| Protein sequence | MLNSITDASG TVTGWQYTVV DTGAVETYDT SGRLQSVRDR NGRTTTLSYN AANQLTTVTA
PSGRSLSFAY DSQNRVASVT APDGAITSYG YNSASMLSSV TRPDGTTRQY VYEDSRFPTA
LTGVIDENGN RYATYAYDDQ GRAISSTLAG GANQYQFQYG DNYQTTVTDP TGKTSVYTFL
KQNGVLLPTA ISAPCGLCGS TRQSSSYDAN NNLIQETDYN STVTSHAYDS QKRETQRVEG
AGTASARTTT TVWHPQFWNL PTQIASPTKL ETYSYDSNGN LTRYSETPTA DSDGSQGFNA
STAGSARTTN WTYTADGQLA TSSGPRTDVA SSTTYVYRTT DDTNAPPLYR KGDLYQIIDP
LGHTTTINQY DASGRPLQTT DANGTVTAFT YSNRGWLTSQ TITLASGTGQ TTNYGYDAVG
QLTKVTLPDS SSVSFSYDGA HRMTGAADSQ GNSIRYTLDA MGNRTQEQAK DPSGNLARQV
TRVFDSMNRP LKVTVGTAQ
|
|---|
| |