Gene RS00943 details

Gene Information

• Locus tag: RS00943
• Symbol: RSp0457
• ID: 1222764
• Type: CDS
• Is gene spliced: No
• Is pseudo gene: No
• Organism name: Ralstonia solanacearum GMI1000
• Kingdom: Bacteria
• Replicon accession: NC_003296
• Strand: -
• Start bp: 569808
• End bp: 571853
• Gene Length: 2046 bp
• Protein Length: 681 aa
• Translation table: 11
• GC content: 63%
• IMG OID: 637240317
• Product: rhs-related protein
• Protein accession: NP_522018
• Protein GI: 17548678
• COG category: [M] Cell wall/membrane/envelope biogenesis
• COG ID: [COG3209] Rhs family protein
• TIGRFAM ID: [TIGR01643] YD repeat (two copies)

Plasmid Coverage information

• Num covering plasmid clones: 14
• Plasmid unclonability p-value: 1
• Plasmid hitchhiking: No
• Plasmid clonability: normal

Fosmid Coverage information

• Num covering fosmid clones: 16
• Fosmid unclonability p-value: 0.739239
• Fosmid Hitchhiker: No
• Fosmid clonability: normal

Sequence

Gene sequence

GTGCTGTCTT TCGAACGCTA TTACAACAGC AGCCAACGCA ATATGGGATC AACGCTTTCC 
CGCAGCGTGC TGACGCCCGA TCCCAAGCCT TTCGCGAACA GCTTGGGCGG CTTGAGTTAT 
TCCGGCACGA TCTCCCATCT GCAGCAATAT TTCGGGGATA ACACAACGCT CGTCCGTACG 
TTCCGCTACA TCAACATTGC AGGCGTGACG GGCACACAGA CAACCGATCA ATCAGGCATT 
CATACGGCCA ACCAAATCCA AGTGGCTCGC GCCGGTGGTC TGTTCTACGA CTACAAGTGG 
GATGGCACCA CGGCCACGGC CGTCAGCCCA TCGACGCACG ATATCCTGCG TTTCACCCCG 
CCTCCGTCCG ATGCGGGTTC GGGCTCGGGG GCAGCGGCCG TCGGCGGGCA GTGGACCCTG 
CGCCGCGCGA TCAATGACGA GACCGAGCGC TACGACGCCA ATGGCGTGTT GCAGCAGATC 
CAGTACCGCA ACGGCCAGAC CAAGACGCTG ACTTACTCGG ACGCATCGAC CCCCACCAAC 
ATTGCCCCCG GCCCAGGCTA CCTGATCGGT ATCAAGGATG CCTTCGGCAA GGCGTTGAGC 
CTGCGCTACG ACAGCTACGG CCGGCTGGCA ACGTTGACCG ATCCCGCCGG GCAGGCTGTG 
ACCTATGGCT ACGAATTGGC CCAGCCACGT TGGAATTGCA CGAGTGCGGA TTGCTTCCGG 
ATCAAGACTG TCACCTATCA GGACGGCAAG ACCAAGACCT ACCACTGGGA CGAGGCTGAC 
TACAACCCCA ACGCCACCAC CCAGCGCAAC CTGCTGACGG GAGTGACTGA CGAGAACAGC 
CAACGGTACT CCACGATCCG CTACGACAGC AAGGGCCAGG CCATGTCGAC CGAACTGGCC 
GGAGGCGTGT TCCGCTACAC CTTCTCGAAC CTGCAGCCGA GGACGTCCGT CACCGTGACG 
GACCCGCTGG GCACCGCACG CACGTTCAAC TTCGTCAATG CCGCTGGGTT GACCCAGTTG 
TCGAGCCTGA CGGGGGCGGC CTGTGACGAT TGTGGTCCGG CATCCGCCAC CTACGACAGC 
AAAGGCAACG TCGCCTCGCA GACCGACTTC AACGGCACCG TGACGTGCTT CGGCTACGAC 
CTGACGCGTA ACCTGGAAAC GGCACGCGTT GAAGGCCTGC CAGCCGGTAC GGCCTGCCCG 
AGCAGTTTGG ATGGGTATAC CGTTCCGGCC GGCGCGCGCA AGACCACCAC GCAGTGGCAC 
CCGGTGTGGC GCCAGCCTGT CAAGGTGGCC CAGCCCAAAC AGACCACCAC CTACACGTTC 
AATGGTGACG GAAGCCAGTA CTGTGCCCCG ACTAGCGCCA AGGTGGACGA CACACCGATC 
GGTGTCGTGT GCAGCCAGAC AGAGCAGCCG ACGGAGGACA GCACCGGTCA GCAGGGCTTC 
AGCGCTACCG CGACGGGCAT GGCCCGCACC ACCCAATGGA CCTATGACGA CGATGGCCAA 
GTGCTGACCG TCAAGGGATC GCGTGCCGAC GTCAACGACC AGGTCAGCTT CAGCTATCGC 
AAGGCGGACG ACACCGCGAC ACCGCCGCAA TTTCGCCGTG GCGATCTGGC TCGTGTGGTG 
GACGCCCTCG GTCATGTGAC CACCTTCGAC CAGACGGACC TCAATGGCCG TCCGCTGCAG 
ATGACGGATG CGAATGGTGT GGTGACGACC TTCACCTACG CGCCGCGCGG TTGGTTGACC 
AGTCAGACCG TGACACCGGC AGGCGGGCCT GGGCAGGTCA CCGGCTACAC CTACGACAGC 
GTTGGTCAAT TGATCAAGGT GACGCAGCCG GACGGCAGCA GTATCGGCTT CACCTATGAC 
GGCGCGCATC GCCTGACGGG TGTCAGCGAC AGCCAGGGCA ACAGCATCAG CTACACGCTG 
GATGCGATAG GCAACCGGAC GCAGGAGCAG GCCAAGGATT CGAGCGGCAC GCTGTCCCGG 
CAGATCACGC GGGTGATCGA CAGCCTGAAC CGGCTGCAGA AGGTCACGGT CGGCACCACG 
CAGTAA 

 

Protein sequence

MLSFERYYNS SQRNMGSTLS RSVLTPDPKP FANSLGGLSY SGTISHLQQY FGDNTTLVRT 
FRYINIAGVT GTQTTDQSGI HTANQIQVAR AGGLFYDYKW DGTTATAVSP STHDILRFTP 
PPSDAGSGSG AAAVGGQWTL RRAINDETER YDANGVLQQI QYRNGQTKTL TYSDASTPTN 
IAPGPGYLIG IKDAFGKALS LRYDSYGRLA TLTDPAGQAV TYGYELAQPR WNCTSADCFR 
IKTVTYQDGK TKTYHWDEAD YNPNATTQRN LLTGVTDENS QRYSTIRYDS KGQAMSTELA 
GGVFRYTFSN LQPRTSVTVT DPLGTARTFN FVNAAGLTQL SSLTGAACDD CGPASATYDS 
KGNVASQTDF NGTVTCFGYD LTRNLETARV EGLPAGTACP SSLDGYTVPA GARKTTTQWH 
PVWRQPVKVA QPKQTTTYTF NGDGSQYCAP TSAKVDDTPI GVVCSQTEQP TEDSTGQQGF 
SATATGMART TQWTYDDDGQ VLTVKGSRAD VNDQVSFSYR KADDTATPPQ FRRGDLARVV 
DALGHVTTFD QTDLNGRPLQ MTDANGVVTT FTYAPRGWLT SQTVTPAGGP GQVTGYTYDS 
VGQLIKVTQP DGSSIGFTYD GAHRLTGVSD SQGNSISYTL DAIGNRTQEQ AKDSSGTLSR 
QITRVIDSLN RLQKVTVGTT Q