| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00941 |
|---|
| Symbol | RSp0455 |
|---|
| ID | 1222762 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 566937 |
|---|
| End bp | 569582 |
|---|
| Gene Length | 2646 bp |
|---|
| Protein Length | 881 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 61% |
|---|
| IMG OID | 637240315 |
|---|
| Product | rhs-related protein |
|---|
| Protein accession | NP_522016 |
|---|
| Protein GI | 17548676 |
|---|
| COG category | [M] Cell wall/membrane/envelope biogenesis |
|---|
| COG ID | [COG3209] Rhs family protein |
|---|
| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.882809 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGAGAGATC AGTCGATTGA TGTTGTCTGC GTCGGATCAG GGCCAAGAAT TCAGAGGTGG
AAGGCCGCAA TCAGCTTAGC AAAGCTTGGA CTGCCAAGCG CTGCGGTCGT TCTTTCGCTT
CTCTCGAGCC TTTCGTTTGC CGGCACCGCG ATCACGCGTG TCGAGGCCAA GCTGCTCTGG
CGTGATGTGT GTACAGGAGC CAACTTCTAC GACACAGAAA GCCAAGCTGT TCAGGCAAGT
ATTGTCTGCC TCCAGGCGTC GAGCCCACCC ACTGCAAGCC AGGTGACCAC CTACTATGGT
GACTTTGCAT GTCCCAGTTC GGTGACGACG AACGGCCAAG CGGTCTATCG CTGCTCGCAC
GTGCAGTACA CCTTTCCGAA TCAGCCGTCC GCGAGTCAGT TGGCCGCAAC ACGGTCCGCA
TATATTGCGG GTTCGAAATG CCCGGATGGA TTTAGTGGGC GCCAAACAGC CATAGACAGC
GACGGCAACA CCGTCTCTTA CTGCACATTG GTCAAAACAA CGTTCGATCC GCCGTCAAAG
GGGTGCCCTT GGGTCGGTGA CCCGATCGAG CCCACTTCCG GGATCACGAA GGAAACGGAG
CTGGACTACC GTGCGCCGAA CGGTCTGCTG GAGTTCGTCC GCACGTATCG CAGCGACATC
GGCCAGTTCA CCTCCGCCGT GTCGTCTTCT GGTTTCTTCG ATTACTCCAG TCCCCCGCTG
GCGCCGATGG GACGCTGCGT CGACGGTCGG TACAACACGA TGCACACGGA TGCCAGCGGT
AACGCTATCA AGGCGTCGTA TTGCTTCCCG GTGATGCCCA TAGGCTCCGT CGACAAGCCG
CATGCCCTGC TCTGGGACGA AACCGGCCGC CAGATCGACT TCGATATGAG CAGCGGGACG
CCGGTGCCTA ACGCCGATAT CAATGATCGC GCTGTCAAAA CCACCGATGC TTCGGGCAAC
GTGCAATGGC GCTTGACGCG TGAGGACAAC ACGGTAGAGC TATACGCAGC GAATGGCGCA
TTGCTGAGTC GCACAACAGC CGATGGCAAA ACCGTGACAT ACAGCTACTC GACCGCCAGC
ACCCCAACGA CGATTGCACC CACGAGCGGA TTGCTGATCG CGCAGACGGA TCCCTTTGGG
CGAGCGCTCA GCTTTCGATA CAACAGCACC GGGCTGATGA CGCAGATGAC GGATCCAGCC
GGACGGGCCT ACAACTACAC CTACGACACA ACCAGCGCCG AGTGTGCCGC GGGAACTTGC
AACCGAGTGG TCCAGGTTCA ATTCCCAGAC CAGTTTGCAC GCCAGTATCT GTACAACGAA
TCGAGCTTGA TCGGCGCGTC CACGCCGCCC AGCCCACCGT TGCTGACCGG AATCAACGAA
GTTTGGCCTG CGACATCCAA TTCAGCCAGA CAAACCGTGC GCGCGAGCAC ATTCGGTTAT
GACAGCAGCA ACTTGTCCAT CCTCACACAA CGGGCTGGCG GCTTGGATCA ATACACCGTC
ACAAGCCGGT CTAGCGGTTC GGTCACCGTG AAGGATCCGC TCGGTGCGCA GCGCACGACG
GCATACCAGA CACTGTTCGG TGCGACCTAC CCCAGCAGCA GGTCACAGCC CGCCGGCAGT
GGCTGCTCGG CATCGACGAC GTCCTGGAAC TATGACGCAC ACGGCAATGC AGCCAGCACG
CTGGATGTCA ACGCGCATCG GACTTGCTCC GCATACGACC TGAGTCGCAA CCTGGAGACG
ACGCGCGTTG CGGGTCTCAG CAACACGGCG ACATGCAGCA CTTACACCGC GACCGGTACG
ATACTGCCAG CGGGCAGCCG CAAGGTGAGC ATGCAGTGGC ACCCGGAATG GCGGCTGGAA
GTGAAGAGAG CCGAGCCTGG GACGATCATC ACTAGCGTGT ACAACGGCCA GCCCGACCCG
TTCAACGCCA ACGCGATGGC GAGCTGCGCC CCTTCGACGG CCTTGCTGCC CGACGGCAAG
CCGATCGCGG TGCTGTGCAC GCAAGTGGAA CAGGCGACGA CCGACATGGA CGGCAGCCAG
GGGCTTAGCG CGAGTCTGCA AAGCGCCGTT CCCAACCGAG TCAGGAGTTG GACCTACAAC
GCCTACGGTC AAGTCCTGAC TGAGACCGAC CCACTGAACA ACACCACGAC CTACACGTAC
TACAGCGACA CCAGCTTCAC GGGAGCGGAC CCGAACGCCG TGGGCCACAC GCTGGGCGAT
CTGCAAAGCG TGACCAACGC CAAAGGGCAG ATGACGCGCT ACACGAAGTA CGACAAACAC
GGCAACGTGC TGGAGAGCGT GGATGCGAAC GGGGTGACGA CAACCAACAC CTACGACTTG
AGGCAGCGCC TACTGAGCGT CAGCGTAGGC GGCCAGAGCA CGAGCTACAC GTACGACGCG
ACGGGCCAAC TGCTCAACGT CACAGCGCCA GACGGCAGCA GTATCGGCTT CACCTATGAC
GGAGCACACC GCCTGACGGG TGTCAGCGAC AGCCAGGGCA ACAGCATCAG CTACACGCTG
GATGCGATAG GCAACCGGAC GCAGGAACAG GCCAAGGATT CGAGCGGCAC GCTGTCCCGG
CAGATCACGC GGGTGATCGA CAGCCTGAAC CGGTTGCAGA AGGTCACGGT CGGCACCGCG
CAGTAA
|
|---|
| Protein sequence | MRDQSIDVVC VGSGPRIQRW KAAISLAKLG LPSAAVVLSL LSSLSFAGTA ITRVEAKLLW
RDVCTGANFY DTESQAVQAS IVCLQASSPP TASQVTTYYG DFACPSSVTT NGQAVYRCSH
VQYTFPNQPS ASQLAATRSA YIAGSKCPDG FSGRQTAIDS DGNTVSYCTL VKTTFDPPSK
GCPWVGDPIE PTSGITKETE LDYRAPNGLL EFVRTYRSDI GQFTSAVSSS GFFDYSSPPL
APMGRCVDGR YNTMHTDASG NAIKASYCFP VMPIGSVDKP HALLWDETGR QIDFDMSSGT
PVPNADINDR AVKTTDASGN VQWRLTREDN TVELYAANGA LLSRTTADGK TVTYSYSTAS
TPTTIAPTSG LLIAQTDPFG RALSFRYNST GLMTQMTDPA GRAYNYTYDT TSAECAAGTC
NRVVQVQFPD QFARQYLYNE SSLIGASTPP SPPLLTGINE VWPATSNSAR QTVRASTFGY
DSSNLSILTQ RAGGLDQYTV TSRSSGSVTV KDPLGAQRTT AYQTLFGATY PSSRSQPAGS
GCSASTTSWN YDAHGNAAST LDVNAHRTCS AYDLSRNLET TRVAGLSNTA TCSTYTATGT
ILPAGSRKVS MQWHPEWRLE VKRAEPGTII TSVYNGQPDP FNANAMASCA PSTALLPDGK
PIAVLCTQVE QATTDMDGSQ GLSASLQSAV PNRVRSWTYN AYGQVLTETD PLNNTTTYTY
YSDTSFTGAD PNAVGHTLGD LQSVTNAKGQ MTRYTKYDKH GNVLESVDAN GVTTTNTYDL
RQRLLSVSVG GQSTSYTYDA TGQLLNVTAP DGSSIGFTYD GAHRLTGVSD SQGNSISYTL
DAIGNRTQEQ AKDSSGTLSR QITRVIDSLN RLQKVTVGTA Q
|
|---|
| |