Gene RS00940 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRS00940 
SymbolRSp0454 
ID1222761 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp565489 
End bp566895 
Gene Length1407 bp 
Protein Length468 aa 
Translation table11 
GC content62% 
IMG OID637240314 
Productrhs-related protein 
Protein accessionNP_522015 
Protein GI17548675 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3209] Rhs family protein 
TIGRFAM ID[TIGR01643] YD repeat (two copies) 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones16 
Fosmid unclonability p-value0.70443 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGATA GCCAACTCTA TCGGGCAATC AGCGCTGCGG TCCTGCTCAC GTTGAGCGCG 
CAGACGCTGG CCCAGACACA AGTCTCAACG ACCCAGTATG CGTACGACAC AGTCGGCAAT
CTGACGCAAA TTACCGACCC GCGAGGGCTG GTGACGACGT TGACCTATGA CGCCCTGGGG
CGTCGTACGA AGGTGCAAGG CCCGCCTGCC ACGCTAGGCG GCACAGTGCC GACCGTCATC
TTCAACTACG ATGGACAGGA TCGCGTGCGG CAAATCACCG ACCCGCGCAG CCTCGTCACC
GCATACACCG TTGACGGTCT GGGCAATACC ACCCAGCAGC AAAGCCCCGA TACCGGCACT
ACTAACGCCA CTTACGACGC GGTTGGAAAT CTCACAAGCC GAACGGATGC GAGAGGCAAA
ACCACCACCT ATAGCTACGA CGCACTGAAT CGCCCGACGC GCGTGGCTTA TGCCAGTGGC
ACCCCCACGG TCCTGGAATA TGACGGTGGC ACCAGTCCGC AGCCGACCGA CATCGGCCAG
CTGACGCGCA TGACCGATGA GTCGGGCAGC ACGCGCTTCC AGTACAACGG CTTCGGCAAC
CTGCTGCAGA AGACGCAGAC CACCACGGCC AACGGCGTCG CCAAGGATCA AACGATTGCG
TATGCCTACG GCACCAGTGG CAGCAGCACC GGACACGTCA CGAGCTTGAC CTTGCCGAGC
GGCAGCGTCA TTGGGTACAG CTATAACGTC GGTGGCCGCA TCTCCGGCCT AACGCTGACC
ACGGCCAATG GCAGTGTCAC GCTGCTGTCG AACATCCAGT ACCAGCCGTT CGGCAAGCCG
AAATCATGGA CGTGGGGCAA CGGCACGGCC TACGTGCGCA GCTTCGACCT GAGCGGCCGA
TTGACCCAGT TCCCGCTGGG CGCGACCACC GGTACCGGCA CCACACCGAA TGGCCTGTCG
CGCACGGTCA ACTACGACGC GGCCTCGCGC ATCTCCGCGT ACACCCATGC CGATACGAGC
GGCAGCACCG GCAGCAGCAC GGCGACTGCA GCGAACCAGA CCTTTGGCTA TGACGATCAG
GACCGGCTGA TCAGCTACCT GCCGGCCAAC AGCAGCCAGA GCTACAGCTA CGACGCCAAC
GGCAACCGCA CGGGTCAGAC CATTGGCGGT GCCAGCTACA CGCAGACCGT CGATCCAGCT
AGCAACCGGC AGACGGCGAG CACAGGACCG ACCGCCTCCA CCAACAGCTA CGATGCGGCG
GGCAACCAGA CGGATGACGG CACCACCACG TACAGCTACA GCGACCGTGG CAGGCTGGCG
AGCGTCAGCA AGAACGGCAC CACCACCAAC TACCTGTACA ACGGGCTAGT GTCCTGTTCC
GTTGTTAACT GGTCTAAGTT TACATAG
 
Protein sequence
MRDSQLYRAI SAAVLLTLSA QTLAQTQVST TQYAYDTVGN LTQITDPRGL VTTLTYDALG 
RRTKVQGPPA TLGGTVPTVI FNYDGQDRVR QITDPRSLVT AYTVDGLGNT TQQQSPDTGT
TNATYDAVGN LTSRTDARGK TTTYSYDALN RPTRVAYASG TPTVLEYDGG TSPQPTDIGQ
LTRMTDESGS TRFQYNGFGN LLQKTQTTTA NGVAKDQTIA YAYGTSGSST GHVTSLTLPS
GSVIGYSYNV GGRISGLTLT TANGSVTLLS NIQYQPFGKP KSWTWGNGTA YVRSFDLSGR
LTQFPLGATT GTGTTPNGLS RTVNYDAASR ISAYTHADTS GSTGSSTATA ANQTFGYDDQ
DRLISYLPAN SSQSYSYDAN GNRTGQTIGG ASYTQTVDPA SNRQTASTGP TASTNSYDAA
GNQTDDGTTT YSYSDRGRLA SVSKNGTTTN YLYNGLVSCS VVNWSKFT