Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS00940 |
Symbol | RSp0454 |
ID | 1222761 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | - |
Start bp | 565489 |
End bp | 566895 |
Gene Length | 1407 bp |
Protein Length | 468 aa |
Translation table | 11 |
GC content | 62% |
IMG OID | 637240314 |
Product | rhs-related protein |
Protein accession | NP_522015 |
Protein GI | 17548675 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 16 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 16 |
Fosmid unclonability p-value | 0.70443 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGATA GCCAACTCTA TCGGGCAATC AGCGCTGCGG TCCTGCTCAC GTTGAGCGCG CAGACGCTGG CCCAGACACA AGTCTCAACG ACCCAGTATG CGTACGACAC AGTCGGCAAT CTGACGCAAA TTACCGACCC GCGAGGGCTG GTGACGACGT TGACCTATGA CGCCCTGGGG CGTCGTACGA AGGTGCAAGG CCCGCCTGCC ACGCTAGGCG GCACAGTGCC GACCGTCATC TTCAACTACG ATGGACAGGA TCGCGTGCGG CAAATCACCG ACCCGCGCAG CCTCGTCACC GCATACACCG TTGACGGTCT GGGCAATACC ACCCAGCAGC AAAGCCCCGA TACCGGCACT ACTAACGCCA CTTACGACGC GGTTGGAAAT CTCACAAGCC GAACGGATGC GAGAGGCAAA ACCACCACCT ATAGCTACGA CGCACTGAAT CGCCCGACGC GCGTGGCTTA TGCCAGTGGC ACCCCCACGG TCCTGGAATA TGACGGTGGC ACCAGTCCGC AGCCGACCGA CATCGGCCAG CTGACGCGCA TGACCGATGA GTCGGGCAGC ACGCGCTTCC AGTACAACGG CTTCGGCAAC CTGCTGCAGA AGACGCAGAC CACCACGGCC AACGGCGTCG CCAAGGATCA AACGATTGCG TATGCCTACG GCACCAGTGG CAGCAGCACC GGACACGTCA CGAGCTTGAC CTTGCCGAGC GGCAGCGTCA TTGGGTACAG CTATAACGTC GGTGGCCGCA TCTCCGGCCT AACGCTGACC ACGGCCAATG GCAGTGTCAC GCTGCTGTCG AACATCCAGT ACCAGCCGTT CGGCAAGCCG AAATCATGGA CGTGGGGCAA CGGCACGGCC TACGTGCGCA GCTTCGACCT GAGCGGCCGA TTGACCCAGT TCCCGCTGGG CGCGACCACC GGTACCGGCA CCACACCGAA TGGCCTGTCG CGCACGGTCA ACTACGACGC GGCCTCGCGC ATCTCCGCGT ACACCCATGC CGATACGAGC GGCAGCACCG GCAGCAGCAC GGCGACTGCA GCGAACCAGA CCTTTGGCTA TGACGATCAG GACCGGCTGA TCAGCTACCT GCCGGCCAAC AGCAGCCAGA GCTACAGCTA CGACGCCAAC GGCAACCGCA CGGGTCAGAC CATTGGCGGT GCCAGCTACA CGCAGACCGT CGATCCAGCT AGCAACCGGC AGACGGCGAG CACAGGACCG ACCGCCTCCA CCAACAGCTA CGATGCGGCG GGCAACCAGA CGGATGACGG CACCACCACG TACAGCTACA GCGACCGTGG CAGGCTGGCG AGCGTCAGCA AGAACGGCAC CACCACCAAC TACCTGTACA ACGGGCTAGT GTCCTGTTCC GTTGTTAACT GGTCTAAGTT TACATAG
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Protein sequence | MRDSQLYRAI SAAVLLTLSA QTLAQTQVST TQYAYDTVGN LTQITDPRGL VTTLTYDALG RRTKVQGPPA TLGGTVPTVI FNYDGQDRVR QITDPRSLVT AYTVDGLGNT TQQQSPDTGT TNATYDAVGN LTSRTDARGK TTTYSYDALN RPTRVAYASG TPTVLEYDGG TSPQPTDIGQ LTRMTDESGS TRFQYNGFGN LLQKTQTTTA NGVAKDQTIA YAYGTSGSST GHVTSLTLPS GSVIGYSYNV GGRISGLTLT TANGSVTLLS NIQYQPFGKP KSWTWGNGTA YVRSFDLSGR LTQFPLGATT GTGTTPNGLS RTVNYDAASR ISAYTHADTS GSTGSSTATA ANQTFGYDDQ DRLISYLPAN SSQSYSYDAN GNRTGQTIGG ASYTQTVDPA SNRQTASTGP TASTNSYDAA GNQTDDGTTT YSYSDRGRLA SVSKNGTTTN YLYNGLVSCS VVNWSKFT
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