| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00901 |
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| Symbol | RSp0442 |
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| ID | 1222749 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | - |
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| Start bp | 554436 |
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| End bp | 555923 |
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| Gene Length | 1488 bp |
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| Protein Length | 495 aa |
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| Translation table | 11 |
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| GC content | 72% |
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| IMG OID | 637240302 |
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| Product | multidrug resistance efflux pump protein |
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| Protein accession | NP_522003 |
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| Protein GI | 17548663 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis
[U] Intracellular trafficking, secretion, and vesicular transport |
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| COG ID | [COG1538] Outer membrane protein |
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| TIGRFAM ID | [TIGR01845] efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family |
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Plasmid Coverage information |
| Num covering plasmid clones | 14 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 0.707111 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAACCGTG CTACTAAACG CTGGGACCTT CGCCGCGCCG CATGCAGCGC GCCAGCGCTG
GCCCTGGCGC TCGCCGGCTG CGTCACCGCG CCCGACGTTC GGGGGCCCGC CCTTGCATCG
CCCGAGGCGG CGCTGCGCTC GCGGGCGGCC GTCGTGGCGG GCGAACCCGC CTTGGCCGAG
ACCGCCGTGC CGTCCCAGTG GTGGGGCCTG TTCGGCGACG CGACGCTGAT CGCCCTGGAA
GCCGAGGCCA CCGAATCCAA CCTGGATCTC CAGAGCGCCG CCCCGCGCAT CGAAGAAAGC
CGGGCACGCC TGGGGCTGGC CGATGCCGCG CGCCAGCCGC AGTTGGCGGC GGATGCCGGG
TACACCCGTT CGGCCATCAG CGAGCACTCG CCGCTGGCCG TGCTCGGCGC GCCGACGCGG
GCCTCCGATA CCTGGCTGCT CGGCCTGGAG GCCGGCTGGG AATTGGACCT CTGGGGGCGC
CTGCGCCATC AGAGCGAATC CGCCGAAGCC AATCTCGAAG CCAGCGGCTA TGGCAAGGAG
GCGGTCAGGG TGTCGATCGC GGCGGAAGTG GCGTACACCT ATCTGCAGTT GCGCGGCGTC
CAGGCCCAGG AGTCCGTTGC CGAGCAAAAC CGCCAGCTCG CGGACGGATT GGTGCGCATG
GCCGAAAGCC GGGAGCGCCA TGGCGTGGCC ACCCGCTTCG ACGCGGCCGC GGCACGCGCC
GATGTGGCCG GAATCGATGC GCGGCTCTCC CAGCTGCACC ACAAGCGCGA GGCCCTGATG
AACGCCCTGG CGCTGCTGCT GGGCAAGCCG CCGCGGGAAC TGGACGACCG CCTCGCCGCG
GCGGCGCTGC CGGCCATGCC CAAGCGCCTG CCGGTGGGCA TCCCCTCTGA ACTGGCCCGG
CAGCGCCCGG ACATTCTGCA GGCGGATGCG CGGCTGCGTG CCGCCGTCGC CGACATCGGC
GCGGCCGAGG CCGACTTCTA CCCCCGCATC AGCCTGACCG GCAGCGCCGG CGTGCAGGCC
TTCGATTTCT CGGACCTGGG CAGCTGGGCG TCCCGGCGCT ACGCCTTCGG GCCGACGCTG
TATCTGCCGA TCTTCGAGGG CGGCCGGCTC AAGAGCAACC TGGCCTTGAG CGCAGCGCGC
CATCGCCTGG CCGCCATCGC GTACCAGCAA ACGGTGCTGC GCGCCTGGCA CGAGGTGGAC
GACGCCCTCG GCGCCTACGC CAGCGAACTG AGGCGGCACG CGCAACTGCA GCTCGCGCTG
GACCAGAACC AGACGGCGCT GAAGGTGGCG CAGCGCGCCT ACCAGCAAGG CACGGCCGAC
TTCACCGCCG TGCTGGTGGC CCAGCGTTCG CTGCTGGCCA GCCATGCCGA GCTGATCGAC
TGCTCGACGG CATCGGCGCT GTCGGTCGTC GGGCTCTATC GCGCCCTTGG CGGGGGCTGG
TCTTCGCAAC TGCGCGCAGA CGCTGCCCCC TCGGGAAGCG CGTCATGA
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| Protein sequence | MNRATKRWDL RRAACSAPAL ALALAGCVTA PDVRGPALAS PEAALRSRAA VVAGEPALAE
TAVPSQWWGL FGDATLIALE AEATESNLDL QSAAPRIEES RARLGLADAA RQPQLAADAG
YTRSAISEHS PLAVLGAPTR ASDTWLLGLE AGWELDLWGR LRHQSESAEA NLEASGYGKE
AVRVSIAAEV AYTYLQLRGV QAQESVAEQN RQLADGLVRM AESRERHGVA TRFDAAAARA
DVAGIDARLS QLHHKREALM NALALLLGKP PRELDDRLAA AALPAMPKRL PVGIPSELAR
QRPDILQADA RLRAAVADIG AAEADFYPRI SLTGSAGVQA FDFSDLGSWA SRRYAFGPTL
YLPIFEGGRL KSNLALSAAR HRLAAIAYQQ TVLRAWHEVD DALGAYASEL RRHAQLQLAL
DQNQTALKVA QRAYQQGTAD FTAVLVAQRS LLASHAELID CSTASALSVV GLYRALGGGW
SSQLRADAAP SGSAS
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