| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00888 |
|---|
| Symbol | RSp0429 |
|---|
| ID | 1222736 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 542505 |
|---|
| End bp | 543704 |
|---|
| Gene Length | 1200 bp |
|---|
| Protein Length | 399 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 64% |
|---|
| IMG OID | 637240289 |
|---|
| Product | multidrug ABC transporter transmembrane protein |
|---|
| Protein accession | NP_521990 |
|---|
| Protein GI | 17548650 |
|---|
| COG category | [G] Carbohydrate transport and metabolism |
|---|
| COG ID | [COG2814] Arabinose efflux permease |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 8 |
|---|
| Plasmid unclonability p-value | 0.0243138 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 25 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGTCCACCT CAAGATTCAA TCGTCACGTC CTGCGCTTGG CCGCCGCGCA AGCCCTGGCC
GGCGCCAATT CAACGGTTGT CTACGCGACC GGTGCCATCA TCGGCAATAT GCTCGCCCCG
AGTCCGGCGC TGGCAACCGT ACCGGTCTCG ATCTTCGTCG TGGGAATGGC GGCTGCGACG
CTTCCAGTCG GCGCAGTGGC CCGGCGCTAC GGCCGGAAAA TTGCCGCCCT GCTCGGTAAC
GCGTGCGGCG TGATCGTCGG CCTTCTGGCG GCATTGGCGC TCGTTATCCA GTCGTTCAAC
CTATTCTGCG TCGCCATGTT GTTTGGCGGC GCGTATGCGG CGGTCGTGCT GACGTTCCGC
TTCGCAGCCG CCGAGTGCGT GCCCCCGGAG GATCGCCCGC GGGCAATGTC CACGGTGCTT
GCTGGCGGTA TCGCAGCCGG CGTGCTCGGG CCGCAGCTGG TTACAGCCAC CATGAATCGA
TGGCCGCCCC ATGCGTATGC GGTCACCTAC CTGGCCTCCG CTGGCGCGGC GGCCCTCTCG
GCCATCGTGT TGCTCGGCGT GCGGTTCGAA CACCAGCCCC CGATCTCGGC CCGCGTACAA
GGGCGTCCGA GTTCCGCCAT CGTTCGGCAG CCGCGTTTCG TTGTGGCGAT GCTTTGCGGT
GTCGTGAGCT ACATGATGAT GAACTTCATG ATGACCTCGG CGCCGCTCGC CATGGAGTTG
TGCGGCATCT CGCGTGCGCA GGCCAACGAT GGCATTGAGA TACACGTCGT CGCCATGTAC
GCGCCAAGCT TTTTTACCGG ACGCCTGATC TCCCGCTTTG GCGCGCCTAA CGTCAGTCTG
GCCGGGCTAG CCTTGATGGC GCTGGCAGCC ATCACGGGCA TGACCGGCCT TGCGGTGGAC
CACTTCTGGG GCGCGCTGAT GCTGCTCGGT TTGGGATGGA ACTTCGGGTT TCTGGGGGCA
TCCGCCATGG TGCTGGCCTG CCATACGCCG GCGGAAGGGC CTCGCGTCCA GTCGATTTAC
GATTTTGTGG TGTTCGGCGC CATGGTCGTT GGCTCTTTCG CATCGGGCGG CCTGTTGACC
ACTTTCGGAT GGTCACTGGT GTGCGGCCTG ATCTTGCCTC CGGTGCTGAT CGCAGCAGCA
AGCGCTTTTT GGCTGCGAGG GAAAACACCC CGAACAGGCC AACAGGCGTC AAGTGACTGA
|
|---|
| Protein sequence | MSTSRFNRHV LRLAAAQALA GANSTVVYAT GAIIGNMLAP SPALATVPVS IFVVGMAAAT
LPVGAVARRY GRKIAALLGN ACGVIVGLLA ALALVIQSFN LFCVAMLFGG AYAAVVLTFR
FAAAECVPPE DRPRAMSTVL AGGIAAGVLG PQLVTATMNR WPPHAYAVTY LASAGAAALS
AIVLLGVRFE HQPPISARVQ GRPSSAIVRQ PRFVVAMLCG VVSYMMMNFM MTSAPLAMEL
CGISRAQAND GIEIHVVAMY APSFFTGRLI SRFGAPNVSL AGLALMALAA ITGMTGLAVD
HFWGALMLLG LGWNFGFLGA SAMVLACHTP AEGPRVQSIY DFVVFGAMVV GSFASGGLLT
TFGWSLVCGL ILPPVLIAAA SAFWLRGKTP RTGQQASSD
|
|---|
| |