| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00872 |
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| Symbol | RSp0415 |
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| ID | 1222722 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 525987 |
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| End bp | 526571 |
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| Gene Length | 585 bp |
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| Protein Length | 194 aa |
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| Translation table | 11 |
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| GC content | 67% |
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| IMG OID | 637240275 |
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| Product | extracytoplasmic function sigma factor transcription regulator protein |
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| Protein accession | NP_521976 |
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| Protein GI | 17548636 |
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| COG category | [K] Transcription |
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| COG ID | [COG1595] DNA-directed RNA polymerase specialized sigma subunit, sigma24 homolog |
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| TIGRFAM ID | [TIGR02937] RNA polymerase sigma factor, sigma-70 family |
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Plasmid Coverage information |
| Num covering plasmid clones | 9 |
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| Plasmid unclonability p-value | 0.037032 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 18 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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| |
Sequence |
| Gene sequence | ATGACCGGTC CGCATTGCGA TTCCGCCTGT TCCTCGTTGA TGACTGCCTT CGTCGATCAC
TACGAGGAGC TGGTCGATCA TGTCCGGCAC CGTTTCGGTG ACCGGGCGTT CGCCCGCGAT
GTCGTCCAGG ATGTCTGCGT GCAACTGCTG CACCGCCCGC CGGCGGAGCC GATCTGTACG
CCGCTGGCGT TCCTGCGGCA TCTGTCGATC CATCGGGCGA TCGATCGCTG GCGCAGCGAC
GAAACGTACG CCGCGTACGC GGAGCAGGCC GGGCAGGTCG CGCCCGATAC CGACGATGTC
GATGGCGAGC GGGTGGTGGC CTCCCGCCAG GCCGTCCACC AGGTCGAGCA GGCCATCGGC
GGCCTGCCGG CGCGCTGCCG CGAGGTGTTC ATCCTGCACA AGCTGCACGA CCTGTCGCAG
GACGAAGTTG CGGTGCGGCT GTGCATTTCA CGCAATATGG TCGCCAAGCA TCTGGCCCGC
GCGATGCTGG CGATGGATCC CATCTCTCCC GCGCTCCGCA TGCCGAAACG GCGGGCGCCG
ATGTTGACCG CGTATTCCAG CGGTCCCGAT CCCTGCGGGC CCTGA
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| Protein sequence | MTGPHCDSAC SSLMTAFVDH YEELVDHVRH RFGDRAFARD VVQDVCVQLL HRPPAEPICT
PLAFLRHLSI HRAIDRWRSD ETYAAYAEQA GQVAPDTDDV DGERVVASRQ AVHQVEQAIG
GLPARCREVF ILHKLHDLSQ DEVAVRLCIS RNMVAKHLAR AMLAMDPISP ALRMPKRRAP
MLTAYSSGPD PCGP
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