| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00864 |
|---|
| Symbol | RSp0407 |
|---|
| ID | 1222714 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 516038 |
|---|
| End bp | 517996 |
|---|
| Gene Length | 1959 bp |
|---|
| Protein Length | 652 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 70% |
|---|
| IMG OID | 637240267 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_521968 |
|---|
| Protein GI | 17548628 |
|---|
| COG category | |
|---|
| COG ID | |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 9 |
|---|
| Plasmid unclonability p-value | 0.131281 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 18 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATCGGCA TGACCACCAA GCTTGCCGCG CTCGAACTGC TGCGCAAGCG CTTGCTCTCC
AGCGCCGACG CCAACCTGCA GAGCCTCGGA CACCTGATCG ACACCCACCC CGAGTTCTGC
CGCATGGGCG CGCTCGGCAC CGCGCTGGGC GACTTCTCGC CGGTCAGGCT GCCGGCGGAC
GCGCCGCTCG GGTCATCGGG GGCCAATCCG TACGTCGAGC TCTGGAAGCT GGTCTTCAAC
GTGTTCGGCG GCGACGGCAC CACCACCAAC CCCGGCCTCA AGCCGGTGCT GGACAAGATC
CGCACCTTGC TCGACAAGCT GGACACGATC GCCGCGGCCG AAGACCTCGA TGCCCTGAAA
GCGATGAGCG GCGAGGTCGA CACGCTCAAC CAGATCGCCA CCGACCTGAA CGCCATCCTG
GTGGCCATCA AGGGTGACGG CACGCTGGCG AACCTGGGCA TCGTGCCGCG CGTGGTCGAC
CTGATCGGCG CGCACGCGCA GCCGGCCATG GTGCGCCCGC GCGTGGGCGG CGGGGTGGGC
TTTCCGCCGC GCTTCTGGAC CGTGCGCGAC TTCCTGTCCA AGCGGCGCAC CGGCAAATTC
GCCCGGCAGC TGTGGGACTC CGCACAGAGC AGCGGCGACG ACCGCTTCCG GGCATACGCG
CTGGGCTGGC TCTCGAGCTG GTCGCTGAGC GCGGGCGGCG CCAGCGCGGT GGCCAGCATC
GTGGGCGCCC CGTACCGCAA CCAGTGGTGG CGCTCCCGCT TCGTCGGCAA CTACATCGAC
CTGTGGAGCT ACGGGTATGC CAAGGTCGGC CCGCGGCCCA AGCCGTACAC CGACTGGCCC
AATCTGTGCG CGCAGGAACT GCACAAGACC GTGGAGCTGC CCGGCGCCGG CTTCGACCCG
GTGCAGATGA TGAAGGACCT GCACCTGGGC AACGCGCTCG GCACGGCGCT CCCGGCGGAG
TTCACCGCGT GGTGGCTCAA TGCCTATGAA ACCGTCTATG GCGACCTGGG CACCAACCGT
CCCCAGATGG ACGCCGACAA GCTGAACGAC GCCTATGCCA TGGCGTGGCT GGTGCTGTGG
TTCCAGACCA GCCGCGAAAG CCTGGGCTGC AACGCGGTGG CCCCGGTGGC CCCCACCAAC
TGCGGCGGCG CGCCACCCTG GAGCAACCCG GTGGTGCCGG GCGACGCGGG CGCCGGCGTG
GGCGGTCCGC CGCCTCCGGA GATCGACAAG AAGGTCAAGC CGGGCAACGT GGTCTGCGCG
ATCATCCTGG CCATCCTGGG CATTGTCGCG TTCTGCTTCG GCGGCTGGGT CGCGGGCGGC
GCCGCGATCG CCGGCGCGAT TGCGCTGGCC GCGACCGCCG GCACCATCGA CTGGGACAAA
TTCCGCTGCA GCCTGGTGTG GTACCGGGTC TATATGTACA ACGGCCTGCG CGCCCTGCAC
GACGTGATGA GCCTGGGCGG CCTGGTGCAT CCCTACACGC CGGAACTGAG CGCGGACGAC
ACCGCCGTCC AGCTGCTCTC CAGCATACCC ACGCACATCC GGACCGGCGA CCACATCGTG
ATGTCCCGGC CCGGGCAGGA GCGGTATCCC GCCGTGCCGT GGGACGGCAG CGGCTTCACC
TGGTTCGAGG ACGCCACCGG CGCGCTGGAA GCGCCCATGC GGGTCGCGGC GCTGGCGGCC
GCCTATCCGT CGGGTTTCCT GGACGATCCC GCCAATCCGC TGGGCAGCCG TTCGACCTTC
GATGCGGCAC CCTGGCCGTT CGCCACGCAG GGTGCCGGCA TGCAGACGCC CGCCGGATTC
ATCAACACCG TGGATGCCAT GCTGGGCTGG CTCGCGGCCC CGACCGGCAC CCCGCTGCCG
GAGCACGACC TGGACGGCGA CCGCGGCCTG GGCCACCAGA ACTGGCACTT CATCAACGAC
GACTGGACCA ATCCGGTCAA CATCGAACCG TCTGCGTGA
|
|---|
| Protein sequence | MIGMTTKLAA LELLRKRLLS SADANLQSLG HLIDTHPEFC RMGALGTALG DFSPVRLPAD
APLGSSGANP YVELWKLVFN VFGGDGTTTN PGLKPVLDKI RTLLDKLDTI AAAEDLDALK
AMSGEVDTLN QIATDLNAIL VAIKGDGTLA NLGIVPRVVD LIGAHAQPAM VRPRVGGGVG
FPPRFWTVRD FLSKRRTGKF ARQLWDSAQS SGDDRFRAYA LGWLSSWSLS AGGASAVASI
VGAPYRNQWW RSRFVGNYID LWSYGYAKVG PRPKPYTDWP NLCAQELHKT VELPGAGFDP
VQMMKDLHLG NALGTALPAE FTAWWLNAYE TVYGDLGTNR PQMDADKLND AYAMAWLVLW
FQTSRESLGC NAVAPVAPTN CGGAPPWSNP VVPGDAGAGV GGPPPPEIDK KVKPGNVVCA
IILAILGIVA FCFGGWVAGG AAIAGAIALA ATAGTIDWDK FRCSLVWYRV YMYNGLRALH
DVMSLGGLVH PYTPELSADD TAVQLLSSIP THIRTGDHIV MSRPGQERYP AVPWDGSGFT
WFEDATGALE APMRVAALAA AYPSGFLDDP ANPLGSRSTF DAAPWPFATQ GAGMQTPAGF
INTVDAMLGW LAAPTGTPLP EHDLDGDRGL GHQNWHFIND DWTNPVNIEP SA
|
|---|
| |