| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00418 |
|---|
| Symbol | RSp0539 |
|---|
| ID | 1222846 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | + |
|---|
| Start bp | 672467 |
|---|
| End bp | 673609 |
|---|
| Gene Length | 1143 bp |
|---|
| Protein Length | 380 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 68% |
|---|
| IMG OID | 637240399 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_522100 |
|---|
| Protein GI | 17548760 |
|---|
| COG category | [E] Amino acid transport and metabolism |
|---|
| COG ID | [COG0683] ABC-type branched-chain amino acid transport systems, periplasmic component |
|---|
| TIGRFAM ID | |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 12 |
|---|
| Plasmid unclonability p-value | 0.303098 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 24 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGATGCTCA AGCGCTTTGC GATCCTGGTG GCCTGGGTCG CCGGTTTCGC GATGCGTGCC
GTGCACGCCG ATGTCATCAC GGTCGCCCAG GTGCTGCCGG AAGGCTCCGT GGAAATGTCG
ATGCGCGCCA CCACCGAGGC GGCGGAGTGC TATCTCCGCA AGGTCAGCGA TGCCGGCGGC
ATCAACGGCC ACACATTCAA CGTCGTGACC GTCGACGCCC CCGGCAGGCT GGACGCCGCC
ACCCAGCGCG CGGCGGAAAC GATTCGCCAG TATCGTCCGG CCGCATTGCT GAACTACTCC
GGGTCGGCAC GCATCGCGGC GCTGATCCGG CGTGGCGTCC TTGACGCGAC CCGCACTCCG
GTGATCGGCG CGAACGTCGC TTCCACGCGG GTGCGGCAAG ACCCGAACAA CCGCTGGGTG
TTCCATGTCC GCGCGGGCGT CCGGGCCGAA GCTGCCAAGA TGGTGAGCCA GGCCGTGTCG
CTGGGCGGCC GGCAGGTCGC CATCCTCTAC CGGGACGATG TGTTCGGAGA AGACGGCATG
CACAGCAGCG TCGACGCGCT GAGCGCATCC GGGCTCGAAC CGGCCGCGGT CCTCCCCATG
CCGACCGACA TGATGGACAG CGCGGCCTTG ACCCAACTGG CGGAGGATGT GCTGCGCGTG
GACGCCGGCG CCATTCTGAT GTTTTCCGAC AGCGTCAACA TCGGCGGGTT CTTGCGCGCC
TATCGCGAGC GCGGCGGGAT TGCCGTGGTG ACGACGGATT CCACGCCGTC CGCCGATGAA
CTGGTGCGCG CATCGAGCGT TGAGCTTGCG CGGAGCGTGC ATCTCACGGA GGTGATGCCG
CCGATCGGCA AGCGCAATGT GCGCCTGGTG CGGGCGTTCG TGGCCGACAT GACCGCCGCC
GGGCGGCCTG ACCTGGCCAG GTCGGTGACG GCGCTCGAGG GCTATGTGGC CGCCCGCCTG
TTTGTCGAGG CGGTGCGCAG GATCAGCGGC CCGGTCACGG GCGAGGCGGT GCGCACGGCG
CTGCTGCAGC GCGGCCCGTT TGACCTGGGG GATTTTGAGA TCCGATTCGG GCCCGCTCAG
TACGAGGGCT CGCGATACGT GGGCATCGGC ATCATCGGCC ACCTGGGACG GGTGTTGAAC
TGA
|
|---|
| Protein sequence | MMLKRFAILV AWVAGFAMRA VHADVITVAQ VLPEGSVEMS MRATTEAAEC YLRKVSDAGG
INGHTFNVVT VDAPGRLDAA TQRAAETIRQ YRPAALLNYS GSARIAALIR RGVLDATRTP
VIGANVASTR VRQDPNNRWV FHVRAGVRAE AAKMVSQAVS LGGRQVAILY RDDVFGEDGM
HSSVDALSAS GLEPAAVLPM PTDMMDSAAL TQLAEDVLRV DAGAILMFSD SVNIGGFLRA
YRERGGIAVV TTDSTPSADE LVRASSVELA RSVHLTEVMP PIGKRNVRLV RAFVADMTAA
GRPDLARSVT ALEGYVAARL FVEAVRRISG PVTGEAVRTA LLQRGPFDLG DFEIRFGPAQ
YEGSRYVGIG IIGHLGRVLN
|
|---|
| |