| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00398 |
|---|
| Symbol | RSp0519 |
|---|
| ID | 1222826 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003296 |
|---|
| Strand | - |
|---|
| Start bp | 647352 |
|---|
| End bp | 648395 |
|---|
| Gene Length | 1044 bp |
|---|
| Protein Length | 347 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 73% |
|---|
| IMG OID | 637240379 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_522080 |
|---|
| Protein GI | 17548740 |
|---|
| COG category | [T] Signal transduction mechanisms |
|---|
| COG ID | [COG2199] FOG: GGDEF domain |
|---|
| TIGRFAM ID | [TIGR00254] diguanylate cyclase (GGDEF) domain |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 13 |
|---|
| Plasmid unclonability p-value | 0.30336 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 16 |
|---|
| Fosmid unclonability p-value | 0.618685 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | GTGCCGCTGA TCCTCGCGCT CAGCAAGTGC GGCGTGCTGG CATTCGGCTT TGCCGTGCTG
CTGGGCCGGG CGGCGGGCCT GCTGCATTCG CTGACGCTGC CGCTGGCGCT GCTGGCGCTG
CTGACGACGA TCGCGGCCAT GGCGCACCGC CGCCAGCACA ACGGCGCGTG GGAGCGGCTG
GCGCTGATGC ACCTGCTGGC GCAGGAGACC GCCGTGATCG TGTTCGGCCA CCAGGCCGGG
CTGCATTGGG TGCTGCCGGC CTTCTACCTG ATGCCGCTGG CGACCAGCCC GGCGTGGCTG
ACGCGCCGCG ATTTCGTGAT CGCCATGTCG CTGTGCGCGG CCGGGCCGCT GGCGGCGCTG
CTCACCGCCA ACGAGCCGGC GCCCGTGGTC CGGCATGCGT GGCTGGGGCT CGCGCTGTAC
CTGCCGATCT GCATCGCCGC CGCCGCGGTC ATCCACAGCT ATCTGCTGCG CGCGATGGCG
CGCCACTTCG CCGCCGAGAC CAAGCTGGCC GACCGCGCCA ACACCGACCA CCTGACGGGG
CGCCTGGCCC GCCAGCGCTT CTTCGAGCTC GGCGCCTTTG CGGTGGAGCG CGCCCGGCAT
CACGGCGAGC CGCTGTGCGC GCTGTATATC GACGTCGATC ACTTCAAGTC CATCAACGAT
GCCTGGGGCC ATGCCGCCGG CGACGATGCG CTGGTGGCGC TGGCCGATGC GCTGGCCGGC
GTGCTGCGTC CGCACGACCT GTTCGGACGC CTGGGCGGCG ACGAGTTCGC CGTACTGCTG
CCGGATTGCG ACCTGGCGAC CGCGCTGTCG GTGGTTGACC GCCTCAAGGC GGCGGTGGCC
GTGCACCGGC ACCCCGTTGG CCCGCTGACC GTCAGCGTGG GCGCGGCGCC GCTGCGCCCG
GGGCAGGAAC TCGCGCACCT GCTGGCCGAC GCCGACCTGG CGCTGATCGA AGCCAAGCGC
CGGGGCCGCA ACCGGGTCTG CGTGCCGTCA GGCTGCGCCA ACGATGCGGC GGGCATGGCG
GGGATCGCCG CATCGGTCGG CTGA
|
|---|
| Protein sequence | MPLILALSKC GVLAFGFAVL LGRAAGLLHS LTLPLALLAL LTTIAAMAHR RQHNGAWERL
ALMHLLAQET AVIVFGHQAG LHWVLPAFYL MPLATSPAWL TRRDFVIAMS LCAAGPLAAL
LTANEPAPVV RHAWLGLALY LPICIAAAAV IHSYLLRAMA RHFAAETKLA DRANTDHLTG
RLARQRFFEL GAFAVERARH HGEPLCALYI DVDHFKSIND AWGHAAGDDA LVALADALAG
VLRPHDLFGR LGGDEFAVLL PDCDLATALS VVDRLKAAVA VHRHPVGPLT VSVGAAPLRP
GQELAHLLAD ADLALIEAKR RGRNRVCVPS GCANDAAGMA GIAASVG
|
|---|
| |