Gene RS00355 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRS00355 
SymbolRSp0477 
ID1222784 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003296 
Strand
Start bp596188 
End bp598413 
Gene Length2226 bp 
Protein Length741 aa 
Translation table11 
GC content61% 
IMG OID637240337 
Productputative RHS-related transmembrane protein 
Protein accessionNP_522038 
Protein GI17548698 
COG category[M] Cell wall/membrane/envelope biogenesis 
COG ID[COG3209] Rhs family protein 
TIGRFAM ID[TIGR01643] YD repeat (two copies) 


Plasmid Coverage information

Num covering plasmid clones19 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones20 
Fosmid unclonability p-value
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGAGAGAGC ACAAACTCTA TCAGGCAATC AGCGCCGCGG TCCTGCTCGC CTTGAGCACG 
CAGACGCTGG CCCAGACGCA AGTCTCAACG ACGCAGTATG CCTACGACGC GGTCGGCAAC
CTGACACAAA TCACCGACCC GCGTGGGCTG GTGACGACGT TGACCTACGA CGCCTTGGGG
CGTCGTACGA AAGTGCAAGG CCCGCCTGCC ACGCCAGGCG GCGCAGTGCC GACCGTCGTC
TTCAACTACG ATGGACAGGA TCGCGTGCGG CAGGTCACCG ACCCGCGTAG CCTAGTCACC
GCATACACCG TTGACGGGTT GGGCAATACC ACCCAGCAGC AAAGCCCCGA CACCGGCACC
ATCAACGCCA CCTATGACGC GGTCGGCAAC CTCACCAGCA GAACCGATGC GCGGGGCAAG
ACCACGACGT ATCGCTACGA TGCATTGGAT CGCTTGATCA GGGCGGATTA CGCGGGCGGC
ACGCCCACTG TCTTTGAATA CGACGGCGGC GCCAACTCGC AGCCCACCGA CATCGGGCAA
CTGACCCGGA TCACCGACGA GTCGGGCAGC ACGCGCTTGC AGTACGACGG CTTCGGCAAC
CTGCTGCAGA AGACCCAGAC CACCACGGCC AACGGCATCG CCAAGGATCA AACGATTGCC
TATGCCTACG GCAGCAGCGG TAGCAGCAAC GGCAAGCGCA TCAGCCAGAC CTACCCGAGC
GGCAACGTCA TCGGCACCAG TTACGACAGT ACCGGTCACA TCGCCGGGCT GACGCTGACG
ACGGCCAATG GCTCGACGCT GCTGCTGTCG AAGATCCAGT ACCAGCCATT CGGCAAACCG
ATCGGCTGGA CCTGGGGCAA CGGCACGCCC TATACGCGCA GCTTCGACTT GAGCGGCCGG
TTGGCCCGGT TCCCGCTGGG GGCGACCAGC GGCAATGGCA CCACGCCCAA TGGCCTGTCG
CGTACGGTCA ACTACGACGC GGCCTCGCGC ATCTCCGCGT ACACGCACAC CGACACGAGC
GGCAGTACCG GCAGTAGCAC GGCGACAGCA GCGAACCAGA CCTTCGGCTA CGACGACCAG
GACCGGGTGA TCAGCTATCT GCCATCGAAC AGCAGCCAGA GCTACAGCTA CGACGCGAAC
GGCAACCGCA CGGGCCAGAC GATCGGGGGC AGCAGCTACA CGCAGACCGT CGATCCGGCC
AGCAACCGGC AGACGGCGAG CACGGGGCCG AGCGCGACGA GGAACAGTTA TGACGCGGCG
GGCAATCTGA CCAGCGACGG CTCGACCACC TACAGCTATA GCGATCGTGG TCGGCTGGCG
AGCGTCACGA AGAACGGCAC GACCACCAAC TACCTGTACA ACGGGTTGGG CCAGCGGGTC
GTCAAGAGCG GTAACAATGT CCCGACGGGA GCTACCCGCT ACGTCTATGA CGGAGCAGGC
CACCTGCTCG GGGAGTACGA TCAGTCGGGC AACGTGCTCC AGGAGACGGT GTACCTGGAG
GATATGCCGG TCGCGACGAT CAAGAATGGC ACAGCGTATT ACGTCTACGC GGACCAGATC
GACACGCCGC GGGTGATCAC GGACACGAAT AACCTGATGG TGTGGAGGTG GGATCAGGCC
GATCCGTTCG GGGCGACGCT GCCGGATGAG AACCCGACCA GCCTCGGCAG CTTTACGTAC
AACCTGCGCT TCCCGGGGCA GGTCTACGAT GCGGAGACGG GCAAGCACTA CAACGTCAAT
CGGGACTATG ATCCGGCGGG TGGGCGCTAC ATCCAGTCCG ATCCGATCGG GCTCAACGGC
GGGCAGTGGT CGACGTACGC ATATGTGGAT GGGGATCCGA TCAGTTACAT TGATCCTGAA
GGATTTTCGG GGGATACTCC TCCTCTGAAA CGGATCCACA GTGATACAAC ATTGGATAGC
GGTTCAAATC GCTACAGCAC GGATTATTGG CGAAATCAGC CGACGAATAA AATAAAAGAT
TCATTGAAAC CGGGGGCTGG GGAGCCGCTA AGGGTCAAGC CAGATGGCCG TGTTGTTGAT
GGTAATACCC GTATTCGAGT TTTGCAAGAG CGTGGGATTG ACGTTAATAA ATTGCCGAGA
ATGCGAGGTG CTATTGCTCT GGGCGCTTGC ATGCAAATGG CTGTCGGCGC GATATTAATG
TCTATTCCGG GAAATGTTGG TCAATGTCAG GATCCCTGTA AGTGTGGTGA ACTATGCAAG
GAATAG
 
Protein sequence
MREHKLYQAI SAAVLLALST QTLAQTQVST TQYAYDAVGN LTQITDPRGL VTTLTYDALG 
RRTKVQGPPA TPGGAVPTVV FNYDGQDRVR QVTDPRSLVT AYTVDGLGNT TQQQSPDTGT
INATYDAVGN LTSRTDARGK TTTYRYDALD RLIRADYAGG TPTVFEYDGG ANSQPTDIGQ
LTRITDESGS TRLQYDGFGN LLQKTQTTTA NGIAKDQTIA YAYGSSGSSN GKRISQTYPS
GNVIGTSYDS TGHIAGLTLT TANGSTLLLS KIQYQPFGKP IGWTWGNGTP YTRSFDLSGR
LARFPLGATS GNGTTPNGLS RTVNYDAASR ISAYTHTDTS GSTGSSTATA ANQTFGYDDQ
DRVISYLPSN SSQSYSYDAN GNRTGQTIGG SSYTQTVDPA SNRQTASTGP SATRNSYDAA
GNLTSDGSTT YSYSDRGRLA SVTKNGTTTN YLYNGLGQRV VKSGNNVPTG ATRYVYDGAG
HLLGEYDQSG NVLQETVYLE DMPVATIKNG TAYYVYADQI DTPRVITDTN NLMVWRWDQA
DPFGATLPDE NPTSLGSFTY NLRFPGQVYD AETGKHYNVN RDYDPAGGRY IQSDPIGLNG
GQWSTYAYVD GDPISYIDPE GFSGDTPPLK RIHSDTTLDS GSNRYSTDYW RNQPTNKIKD
SLKPGAGEPL RVKPDGRVVD GNTRIRVLQE RGIDVNKLPR MRGAIALGAC MQMAVGAILM
SIPGNVGQCQ DPCKCGELCK E