Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
Locus tag | RS00355 |
Symbol | RSp0477 |
ID | 1222784 |
Type | CDS |
Is gene spliced | No |
Is pseudo gene | No |
Organism name | Ralstonia solanacearum GMI1000 |
Kingdom | Bacteria |
Replicon accession | NC_003296 |
Strand | + |
Start bp | 596188 |
End bp | 598413 |
Gene Length | 2226 bp |
Protein Length | 741 aa |
Translation table | 11 |
GC content | 61% |
IMG OID | 637240337 |
Product | putative RHS-related transmembrane protein |
Protein accession | NP_522038 |
Protein GI | 17548698 |
COG category | [M] Cell wall/membrane/envelope biogenesis |
COG ID | [COG3209] Rhs family protein |
TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
Num covering plasmid clones | 19 |
Plasmid unclonability p-value | 1 |
Plasmid hitchhiking | No |
Plasmid clonability | normal |
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Fosmid Coverage information |
Num covering fosmid clones | 20 |
Fosmid unclonability p-value | 1 |
Fosmid Hitchhiker | No |
Fosmid clonability | normal |
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Sequence |
Gene sequence | ATGAGAGAGC ACAAACTCTA TCAGGCAATC AGCGCCGCGG TCCTGCTCGC CTTGAGCACG CAGACGCTGG CCCAGACGCA AGTCTCAACG ACGCAGTATG CCTACGACGC GGTCGGCAAC CTGACACAAA TCACCGACCC GCGTGGGCTG GTGACGACGT TGACCTACGA CGCCTTGGGG CGTCGTACGA AAGTGCAAGG CCCGCCTGCC ACGCCAGGCG GCGCAGTGCC GACCGTCGTC TTCAACTACG ATGGACAGGA TCGCGTGCGG CAGGTCACCG ACCCGCGTAG CCTAGTCACC GCATACACCG TTGACGGGTT GGGCAATACC ACCCAGCAGC AAAGCCCCGA CACCGGCACC ATCAACGCCA CCTATGACGC GGTCGGCAAC CTCACCAGCA GAACCGATGC GCGGGGCAAG ACCACGACGT ATCGCTACGA TGCATTGGAT CGCTTGATCA GGGCGGATTA CGCGGGCGGC ACGCCCACTG TCTTTGAATA CGACGGCGGC GCCAACTCGC AGCCCACCGA CATCGGGCAA CTGACCCGGA TCACCGACGA GTCGGGCAGC ACGCGCTTGC AGTACGACGG CTTCGGCAAC CTGCTGCAGA AGACCCAGAC CACCACGGCC AACGGCATCG CCAAGGATCA AACGATTGCC TATGCCTACG GCAGCAGCGG TAGCAGCAAC GGCAAGCGCA TCAGCCAGAC CTACCCGAGC GGCAACGTCA TCGGCACCAG TTACGACAGT ACCGGTCACA TCGCCGGGCT GACGCTGACG ACGGCCAATG GCTCGACGCT GCTGCTGTCG AAGATCCAGT ACCAGCCATT CGGCAAACCG ATCGGCTGGA CCTGGGGCAA CGGCACGCCC TATACGCGCA GCTTCGACTT GAGCGGCCGG TTGGCCCGGT TCCCGCTGGG GGCGACCAGC GGCAATGGCA CCACGCCCAA TGGCCTGTCG CGTACGGTCA ACTACGACGC GGCCTCGCGC ATCTCCGCGT ACACGCACAC CGACACGAGC GGCAGTACCG GCAGTAGCAC GGCGACAGCA GCGAACCAGA CCTTCGGCTA CGACGACCAG GACCGGGTGA TCAGCTATCT GCCATCGAAC AGCAGCCAGA GCTACAGCTA CGACGCGAAC GGCAACCGCA CGGGCCAGAC GATCGGGGGC AGCAGCTACA CGCAGACCGT CGATCCGGCC AGCAACCGGC AGACGGCGAG CACGGGGCCG AGCGCGACGA GGAACAGTTA TGACGCGGCG GGCAATCTGA CCAGCGACGG CTCGACCACC TACAGCTATA GCGATCGTGG TCGGCTGGCG AGCGTCACGA AGAACGGCAC GACCACCAAC TACCTGTACA ACGGGTTGGG CCAGCGGGTC GTCAAGAGCG GTAACAATGT CCCGACGGGA GCTACCCGCT ACGTCTATGA CGGAGCAGGC CACCTGCTCG GGGAGTACGA TCAGTCGGGC AACGTGCTCC AGGAGACGGT GTACCTGGAG GATATGCCGG TCGCGACGAT CAAGAATGGC ACAGCGTATT ACGTCTACGC GGACCAGATC GACACGCCGC GGGTGATCAC GGACACGAAT AACCTGATGG TGTGGAGGTG GGATCAGGCC GATCCGTTCG GGGCGACGCT GCCGGATGAG AACCCGACCA GCCTCGGCAG CTTTACGTAC AACCTGCGCT TCCCGGGGCA GGTCTACGAT GCGGAGACGG GCAAGCACTA CAACGTCAAT CGGGACTATG ATCCGGCGGG TGGGCGCTAC ATCCAGTCCG ATCCGATCGG GCTCAACGGC GGGCAGTGGT CGACGTACGC ATATGTGGAT GGGGATCCGA TCAGTTACAT TGATCCTGAA GGATTTTCGG GGGATACTCC TCCTCTGAAA CGGATCCACA GTGATACAAC ATTGGATAGC GGTTCAAATC GCTACAGCAC GGATTATTGG CGAAATCAGC CGACGAATAA AATAAAAGAT TCATTGAAAC CGGGGGCTGG GGAGCCGCTA AGGGTCAAGC CAGATGGCCG TGTTGTTGAT GGTAATACCC GTATTCGAGT TTTGCAAGAG CGTGGGATTG ACGTTAATAA ATTGCCGAGA ATGCGAGGTG CTATTGCTCT GGGCGCTTGC ATGCAAATGG CTGTCGGCGC GATATTAATG TCTATTCCGG GAAATGTTGG TCAATGTCAG GATCCCTGTA AGTGTGGTGA ACTATGCAAG GAATAG
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Protein sequence | MREHKLYQAI SAAVLLALST QTLAQTQVST TQYAYDAVGN LTQITDPRGL VTTLTYDALG RRTKVQGPPA TPGGAVPTVV FNYDGQDRVR QVTDPRSLVT AYTVDGLGNT TQQQSPDTGT INATYDAVGN LTSRTDARGK TTTYRYDALD RLIRADYAGG TPTVFEYDGG ANSQPTDIGQ LTRITDESGS TRLQYDGFGN LLQKTQTTTA NGIAKDQTIA YAYGSSGSSN GKRISQTYPS GNVIGTSYDS TGHIAGLTLT TANGSTLLLS KIQYQPFGKP IGWTWGNGTP YTRSFDLSGR LARFPLGATS GNGTTPNGLS RTVNYDAASR ISAYTHTDTS GSTGSSTATA ANQTFGYDDQ DRVISYLPSN SSQSYSYDAN GNRTGQTIGG SSYTQTVDPA SNRQTASTGP SATRNSYDAA GNLTSDGSTT YSYSDRGRLA SVTKNGTTTN YLYNGLGQRV VKSGNNVPTG ATRYVYDGAG HLLGEYDQSG NVLQETVYLE DMPVATIKNG TAYYVYADQI DTPRVITDTN NLMVWRWDQA DPFGATLPDE NPTSLGSFTY NLRFPGQVYD AETGKHYNVN RDYDPAGGRY IQSDPIGLNG GQWSTYAYVD GDPISYIDPE GFSGDTPPLK RIHSDTTLDS GSNRYSTDYW RNQPTNKIKD SLKPGAGEPL RVKPDGRVVD GNTRIRVLQE RGIDVNKLPR MRGAIALGAC MQMAVGAILM SIPGNVGQCQ DPCKCGELCK E
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