| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RS00354 |
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| Symbol | RSp0476 |
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| ID | 1222783 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003296 |
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| Strand | + |
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| Start bp | 591920 |
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| End bp | 596026 |
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| Gene Length | 4107 bp |
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| Protein Length | 1368 aa |
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| Translation table | 11 |
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| GC content | 64% |
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| IMG OID | 637240336 |
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| Product | putative RHS-related transmembrane protein |
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| Protein accession | NP_522037 |
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| Protein GI | 17548697 |
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| COG category | [M] Cell wall/membrane/envelope biogenesis |
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| COG ID | [COG3209] Rhs family protein |
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| TIGRFAM ID | [TIGR01643] YD repeat (two copies) |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 16 |
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| Fosmid unclonability p-value | 1 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGTACCTAT CCAAATCTCG ACGACCCATA ACGGGCCGGC CGCTGGCGCG CACCATTACG
GCTGCATTTC TGCTGACCGC TCTGGGAATC AGCATCCAGG CATCCGCTTC TGTCCCGGTT
GATCCGGGCA CAGCTTCGCT GGAAACACGC CTGCGCGAAG CACGCGTGTT CGAGGAGCCC
CTGATCGCCA CCGGCCCCAG CAGCGTTGAG GAGCAGCAAG CCCTCTGGCA GGCCGTGCAG
CAATACCGCG ATGCCGGCAA TGCCGAGGCG TTCGCGCCGC TGCAATCGTT CCTGACCCAG
TATCCCAACA GCGCATGGGG CCTCGCGCTG CGCACCAACC TCGGCCTGAC TTACTACCGC
CTGGGCTACT TTTCGCGCGC AATGGACGCC TGGGAAGCAG CATGGCGGGA CGCTCGGGCC
CAAACGCAAC CGGAGACCAA GCGCCTGGCC GACCGCGCGC TGGGCGAACT GGTGCGCATG
CACGCCCGCA TCGGCCACGC CGATCGCGTG ACCGCGCTGC TGGAGGAAGC CCAGGCGCGT
CCGCTGCAAG GCCCAGCCAC CGAAGCCATC GCTGGCGCGC GCGAAGGGCT CTGGCTGATG
CGCAACGAGC CGGGTGTCGC CTATCTGTGC GGCCCGATGG CGCTCAAGAA CATCCTGGAG
TTCCAAGGTG CGGATCGGTC CCGCATCGCG AAGATCAACG CAGTCCGTTC CAGCCCGCAG
GGCGTGACGC TCGATACCGT GGGCAAGCTG GCGCAGCAGG TGAAGCTGCC GTACACCATC
GCCCGCCGCA GCCCCGGCAC CCCGATTCCG CTGCCGGCGG TGGTGCACTG GAAGATCAAC
CACTACGCGG CCATCGTCGC GGAAGAGAAC GGGCAATACC ACCTCAAGGA CCCGACCTTC
GGGCGCGACC TGTGGATCAG CAAGGCGGCG CTGGAGGCGG AGACCAGCAA CTACTTCCTG
ATTCCCAAGC AGGCGGCCAG GCAACCGGGC TGGAAGACGG TCGCCCAGGC CGAGGCGAAG
CAGGTGTTCG GCATGGGTGC GACCACGGTG GTCGATGAGA CGCGCCTGAC GCCGAACGAT
CCGAAGGCGT GCGACTGCAA GAACGAGGAC AACGCCAACA GCACGGGCGC TGCTGACGCC
GGTATCGGTG GCGGGTTGGA GGGCATCCCC AGCATGGGCA TGCCGAGCTA CAACGTGCAC
GCGATGCTGG TCAGCCTGAA CGTGGTCGAC ACGCCGGTCG GCTATCGGCC GCCCAAGGGG
CCGGCCGTCA ATTTCACGCT GACCTACAAC CAGCGGGACG CGCATCAGCC GGCCAACTTC
ACGTACTTCA ACTTCGGTCC GAAGTGGACG TCGAACTGGT TGAGCTACGT GCAGGACGAT
CCGGCCAGTC CGGGCAGCAG TGTCATGCGC TACGTGGCAG GCGGCGGGGT GGTGTTCCAG
AGCGGGTACA ACACCAGCAC GGGGACTTTC ACGGTGGAGG CAGCCGAAGC ATCGGTGCTG
GTGCGGACCT CGGCCACCAG CTACGAGCGT CGCCTGAGCG ATGGCAGCAA GGAGGTGTAC
GCGCAGCCGG ACGGGGCGAC GTATGCGCCG CGCCGGGTGT TCCTGACCCA GATCGTGGAT
CGCCGGGGCA ACGCGGTGAC GCTGACCTAT GACGGGCAAC AGCGCTTGAC CGCCGTGACC
GACGCGCTGG GCAAGCGCAC CACGCTCGGC TACGGCAACG CGAGCAATCC GCTGCTGGTC
ACACAGATCA CCGATCCGTT CGGGCGCATG GCGCAGATCG GCTACGACGC GAGCGGCCTG
CTGAGCGACA TCACTGACGC CATCGGCATG AAGTCGAGCT TCAGCTACGA CGCGGGCACG
TTCATCAACG CGATGACGAC GCCGTACGGC ACGACGCACT TCGCCTATGG CGAGAGCGGG
ATGCAGCGCT GGATCAACAT CACCGATCCG TTGGGGCAGA CCGAGCGTGT CGAGTATGCG
CACCCGACGC CGGGGATGTC GCCCTCGGAG TCGCAAGCAC CTGCCGGGAT GAACGTGTTC
AACGAGTGGC TGCACTATCG CAACACGTAC TATTGGAACG CCAAGGCTTA TGCGGAGAGC
GCGGGCGACT ATACGAAGGC GCGTCTGACG CACTGGTTCC ACGCGAAAGA CAACTCCCAA
ATGACGGCCG GAGCGATCGA GAGCACCAAG GAACCGCAGG AAAGCCGCGT CTGGTACAAG
TACGCCAACC AGGTGTGGGC TGCAGCGGTT GGCCCAACGG AGCAACCGAC GCAGATCGGC
CGCGTGCGCG ACGACGGTAC GACTGAGCGT GTCCAGCTGA CCTACAACGC GCAGGGGAAC
CTCACCACCA AGATCGACGC GGCGGGTCAG CAGGTCTCGT ACGACTATGC GAGCAACGGC
ATCGACGTTG TGCGCATCTA TGGATTGGGT ATCAACCCGA TCGCCGAGTA CACCTACGAC
GACCAGCACA ATCCGCTGAC CTACCGCGAT GCCGCGGGCC AGGTGACGAC CTACACCTAC
AACGCGGCCG GGCAGAAGAC CAGCGAGACC AACGCGCTGG GGCAGACGAC CCGCTGGGAA
TACGACAACG ACGGTTTCCT GCAGCGCGTA GTCAATGCCA GTGGCAAGGC CGATGTCAGC
TTCACCTACG ATGCGGTGGG CCGCGTCGCC AGCCGGACCG ATGCCGAAGG CTATACGCTC
AGGTATCAGT ACGACGCCCT CAATCGCCTA ACGCAGATCC AGTACCCCGA CAACACGACG
CGCGTGCAGG CCTGGGACAA GCTTGATCTG GCGAGCGTGA CCGATCAGAT GGGCCGTGTC
ACGCGTTACG CTTACAACAG CGCGCGCAAC CGGGTCCGGG CCACGGATCC GCTCGGCCGG
GCCACGCAGT ACGACTACTA TCCGAACGGC AAGATCAAGA CCGAAACCGA TGCCAACGGT
ACGGTGACGG CGTTCACCTA TACGCCGAGC GGTCGCCTGG CGACACGGAC GGTGACGGCC
GCGGGCGGCG CAGCCCAGAC GACGTCCTAT AGCTACGACG GCATCGGTCA ATTGACGCAG
GTGACGCAGC ACGACGGGAG CACGGCCACG TACAAGTACG ACGGCGCGCG CCGATTGACG
GCGGCCACCG ATACCCAGGG CAACAGCGTC CAATACACGC TGGACCAGCG GGGCAACCAC
ACCCAGGACC AGCTCAAGGA TCCAAGCGGT AATCCGACAC GGCAGGTCGA TCGCGTGTTC
GATGCGATGA ATCGCCCGGT ACAGGTCACG CAGCAGGGCG GATTGCCGAC AAGCGCCGCG
ACCGAAGCGC TGATCAAGGT CGTACCGGTG GGCGTTACCG CCTCCAGCAC TTACAGCGAC
AATGTCCCGG CACGGGTGAT CGATGGTGTT TCCAGCAACG CCTGGATTGC CTCTGGCTAC
GCTCCACAGT GGATCGAGGT GGACCTGGGT GCAGCGGTGC CGCTCAAGAA ACTGCGGATG
TTGGTTTCGC AGAGTCCCGC TGGTCAGACC ACGCATGTTG TGACGGGTGG CATGAACCCC
GCACCGACGA GTGTGCTCCA GACCGTGTCG CGCAATACTG TGGATGGGCA ATGGTTGGAG
GTGTCGTTGG ACACGGCGGT CAGTGTCCGC TACATCCGGA TCAGCACCAC TGGGAGCCCA
TCGTGGGTGT CCTGGCATGA GCTGGAGTTC TATCGAACCC CAGAGGGAGC AAGCACGCTG
ACGAAGATCT TGCCGACAGC CGTCACGGCC TCGGGCTATT ACAGCTCAAA CGTCCCGGGT
CAGGCCGTCG ATGGCAAGAA TGACACGTCG TGGACAGCCA CGGACGCGCC GCAATGGATC
GAGGTCGATC TGGGTGCGGT GGTGCCACTC AAGAAGATGC GTCTGTTGAC CTCGCAGAGT
CCGGCTGGTC AGACCACACA CGTTGTGACA GCTGATACGG CAGCCGCACC GACCAATGTG
CTGCAGACCT TCTCGGGTAA CACGACGGAT AACCAATGGC TTGAGGCCTC GCGGGAGACG
GCGCCGGTCA ATGTCCGCTA TGTCCGGATC CAGACAACGT CCAGCCCGTC GTGGGTGTCG
TGGCACGAAC TCGAGTTTTA CCGTTGA
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| Protein sequence | MYLSKSRRPI TGRPLARTIT AAFLLTALGI SIQASASVPV DPGTASLETR LREARVFEEP
LIATGPSSVE EQQALWQAVQ QYRDAGNAEA FAPLQSFLTQ YPNSAWGLAL RTNLGLTYYR
LGYFSRAMDA WEAAWRDARA QTQPETKRLA DRALGELVRM HARIGHADRV TALLEEAQAR
PLQGPATEAI AGAREGLWLM RNEPGVAYLC GPMALKNILE FQGADRSRIA KINAVRSSPQ
GVTLDTVGKL AQQVKLPYTI ARRSPGTPIP LPAVVHWKIN HYAAIVAEEN GQYHLKDPTF
GRDLWISKAA LEAETSNYFL IPKQAARQPG WKTVAQAEAK QVFGMGATTV VDETRLTPND
PKACDCKNED NANSTGAADA GIGGGLEGIP SMGMPSYNVH AMLVSLNVVD TPVGYRPPKG
PAVNFTLTYN QRDAHQPANF TYFNFGPKWT SNWLSYVQDD PASPGSSVMR YVAGGGVVFQ
SGYNTSTGTF TVEAAEASVL VRTSATSYER RLSDGSKEVY AQPDGATYAP RRVFLTQIVD
RRGNAVTLTY DGQQRLTAVT DALGKRTTLG YGNASNPLLV TQITDPFGRM AQIGYDASGL
LSDITDAIGM KSSFSYDAGT FINAMTTPYG TTHFAYGESG MQRWINITDP LGQTERVEYA
HPTPGMSPSE SQAPAGMNVF NEWLHYRNTY YWNAKAYAES AGDYTKARLT HWFHAKDNSQ
MTAGAIESTK EPQESRVWYK YANQVWAAAV GPTEQPTQIG RVRDDGTTER VQLTYNAQGN
LTTKIDAAGQ QVSYDYASNG IDVVRIYGLG INPIAEYTYD DQHNPLTYRD AAGQVTTYTY
NAAGQKTSET NALGQTTRWE YDNDGFLQRV VNASGKADVS FTYDAVGRVA SRTDAEGYTL
RYQYDALNRL TQIQYPDNTT RVQAWDKLDL ASVTDQMGRV TRYAYNSARN RVRATDPLGR
ATQYDYYPNG KIKTETDANG TVTAFTYTPS GRLATRTVTA AGGAAQTTSY SYDGIGQLTQ
VTQHDGSTAT YKYDGARRLT AATDTQGNSV QYTLDQRGNH TQDQLKDPSG NPTRQVDRVF
DAMNRPVQVT QQGGLPTSAA TEALIKVVPV GVTASSTYSD NVPARVIDGV SSNAWIASGY
APQWIEVDLG AAVPLKKLRM LVSQSPAGQT THVVTGGMNP APTSVLQTVS RNTVDGQWLE
VSLDTAVSVR YIRISTTGSP SWVSWHELEF YRTPEGASTL TKILPTAVTA SGYYSSNVPG
QAVDGKNDTS WTATDAPQWI EVDLGAVVPL KKMRLLTSQS PAGQTTHVVT ADTAAAPTNV
LQTFSGNTTD NQWLEASRET APVNVRYVRI QTTSSPSWVS WHELEFYR
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