| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3409 |
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| Symbol | |
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| ID | 1222273 |
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| Type | CDS |
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| Is gene spliced | No |
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| Is pseudo gene | No |
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| Organism name | Ralstonia solanacearum GMI1000 |
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| Kingdom | Bacteria |
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| Replicon accession | NC_003295 |
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| Strand | - |
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| Start bp | 3685534 |
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| End bp | 3686205 |
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| Gene Length | 672 bp |
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| Protein Length | 223 aa |
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| Translation table | 11 |
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| GC content | 68% |
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| IMG OID | 637239826 |
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| Product | amino-acid transmembrane ABC transporter protein |
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| Protein accession | NP_521528 |
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| Protein GI | 17548126 |
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| COG category | [E] Amino acid transport and metabolism |
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| COG ID | [COG0765] ABC-type amino acid transport system, permease component |
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| TIGRFAM ID | [TIGR01726] amine acid ABC transporter, permease protein, 3-TM region, His/Glu/Gln/Arg/opine family
[TIGR03003] ectoine/hydroxyectoine ABC transporter, permease protein EhuD
[TIGR03004] ectoine/hydroxyectoine ABC transporter, permease protein EhuC |
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Plasmid Coverage information |
| Num covering plasmid clones | 16 |
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| Plasmid unclonability p-value | 1 |
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| Plasmid hitchhiking | No |
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| Plasmid clonability | normal |
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Fosmid Coverage information |
| Num covering fosmid clones | 13 |
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| Fosmid unclonability p-value | 0.318024 |
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| Fosmid Hitchhiker | No |
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| Fosmid clonability | normal |
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Sequence |
| Gene sequence | ATGAGTGCAG CGGCATTTCT TGAGCACGCG CGGGAGTTCC TGCCGATCCT GCTGCAGGGG
GCGGTGGTCA CGGTGGAGGT GACCGTGCTG TCGTTCCTGC TGTCCAGCGT GATCGGGCTG
GCGCTGGCGC TGATGCGGCT CTCGCCCATC AAGGCCGTGT CGGCGGCCGG GGCGACCATC
GTCAACATCA TCCGCGGGCT GCCGATCATC GTGCAGCTGT TCTACATCTA CTTCGTGCTG
CCGGACATCG GCATCCAGCT CACCGCGTTC CAGGCGGGCG TGATCGGGCT GGGCATTGCG
TACTCGGCGT ACCAGGCGGA GAACTTCCGC GCGGGCATCG AGGCGGTGGA CCCGGGCCAG
CGCGAGGCGG CGCAGGCGAT GGGCATGCGC GGGGCGCTGA TCATGCGGCG CGTGATCCTG
CCGCAGGCGT TCCGCATCGC GCTGCCGCCG TACGGCAATA CGCTGGTGAT GATGCTCAAG
GATTCGTCGC TGGTGTCCAC CATCACGGTG GCGGAGATGA CGCGCGCGGG GCAGCTGATC
GCGTCGTCCA CGTTCCAGAA CATGACGGTC TATACGCTGG TGGCGCTGCT GTACCTGCTG
ATGAGCCTGC CGCTGGTGTT CGGCCTGCGC CGGCTGGAGC GCCGCATGGG CGCGGGAAGG
GGCCAGCGAT GA
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| Protein sequence | MSAAAFLEHA REFLPILLQG AVVTVEVTVL SFLLSSVIGL ALALMRLSPI KAVSAAGATI
VNIIRGLPII VQLFYIYFVL PDIGIQLTAF QAGVIGLGIA YSAYQAENFR AGIEAVDPGQ
REAAQAMGMR GALIMRRVIL PQAFRIALPP YGNTLVMMLK DSSLVSTITV AEMTRAGQLI
ASSTFQNMTV YTLVALLYLL MSLPLVFGLR RLERRMGAGR GQR
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