Gene RSc3408 details

Gene Information       Plasmid Coverage information       Fosmid Coverage information       Sequence       

Gene Information

Locus tagRSc3408 
Symbol 
ID1222272 
TypeCDS 
Is gene splicedNo 
Is pseudo geneNo 
Organism nameRalstonia solanacearum GMI1000 
KingdomBacteria 
Replicon accessionNC_003295 
Strand
Start bp3684776 
End bp3685537 
Gene Length762 bp 
Protein Length253 aa 
Translation table11 
GC content71% 
IMG OID637239825 
ProductABC transporter ATP-binding protein 
Protein accessionNP_521527 
Protein GI17548125 
COG category[E] Amino acid transport and metabolism 
COG ID[COG1126] ABC-type polar amino acid transport system, ATPase component 
TIGRFAM ID 


Plasmid Coverage information

Num covering plasmid clones16 
Plasmid unclonability p-value
Plasmid hitchhikingNo 
Plasmid clonabilitynormal 
 

Fosmid Coverage information

Num covering fosmid clones15 
Fosmid unclonability p-value0.711353 
Fosmid HitchhikerNo 
Fosmid clonabilitynormal 
 

Sequence

Gene sequence
ATGATCGAGA TCCGCGAGCT GCAGAAGCAC TTTGGCGAGC ACCACGTGCT GCGCGGCGTG 
AGCCTGCGCG TGGACAAGGG CGAGGTGGTG TGCCTGATCG GCCCGTCGGG CTCGGGCAAG
TCGACCGTCC TGCGCTGCAT CAACGGGCTG GAGTCGTACG ACGGCGGCGA GATCCGCGCC
TTCGGCGAGC GCGTGGACCG CGACGGCAAG GCCATCCACA CGCTGCGCAG CCGCATGGGC
ATGGTGTTCC AGCGCTTCAA CCTGTTCCCG CACCGCAGCG TGCTGGAGAA CGTGATGGAA
GGCCCGGTCT ACGTGAAGGG CGAACGGCCC GATGCAGCGC GCGCCAAGGC CATGGCGCTG
CTGGAGAAGG TGGGCCTGGC CGCCAAGGCG CAGGCCTACC CGGCCCAGCT CTCCGGCGGC
CAGCAGCAGC GCGTGGCGAT CGCCCGCGCG CTGGCGATGG AGCCCGAGGC GATGCTGTTC
GACGAGCCCA CCTCGGCGCT GGACCCGGAG CTGGTCGGCG ATGTGCTGGA GGTGATGCGC
GCGCTGGCCC GCGAGGGCAT GACGATGATC GTCGTCACGC ACGAGATGGG CTTCGCGCGC
GAGGTGGCCG ACCGGGTGTG CTTCCTGCAC AGCGGCACCA TCGTCGAGGA AGGGCCGGCC
GCGCAGGTGC TGGGCGCGCC GCGCCAGCCG CGCACGCAGG ACTTCCTGCG CCGCGTGCTG
CACAAGCCGG CCGAGCCGGC CACGGGAGAC CTGGCGCTAT GA
 
Protein sequence
MIEIRELQKH FGEHHVLRGV SLRVDKGEVV CLIGPSGSGK STVLRCINGL ESYDGGEIRA 
FGERVDRDGK AIHTLRSRMG MVFQRFNLFP HRSVLENVME GPVYVKGERP DAARAKAMAL
LEKVGLAAKA QAYPAQLSGG QQQRVAIARA LAMEPEAMLF DEPTSALDPE LVGDVLEVMR
ALAREGMTMI VVTHEMGFAR EVADRVCFLH SGTIVEEGPA AQVLGAPRQP RTQDFLRRVL
HKPAEPATGD LAL