| Gene Information Plasmid Coverage information Fosmid Coverage information Sequence |
Gene Information |
| Locus tag | RSc3397 |
|---|
| Symbol | |
|---|
| ID | 1222261 |
|---|
| Type | CDS |
|---|
| Is gene spliced | No |
|---|
| Is pseudo gene | No |
|---|
| Organism name | Ralstonia solanacearum GMI1000 |
|---|
| Kingdom | Bacteria |
|---|
| Replicon accession | NC_003295 |
|---|
| Strand | - |
|---|
| Start bp | 3665863 |
|---|
| End bp | 3666381 |
|---|
| Gene Length | 519 bp |
|---|
| Protein Length | 172 aa |
|---|
| Translation table | 11 |
|---|
| GC content | 66% |
|---|
| IMG OID | 637239814 |
|---|
| Product | hypothetical protein |
|---|
| Protein accession | NP_521516 |
|---|
| Protein GI | 17548114 |
|---|
| COG category | [K] Transcription |
|---|
| COG ID | [COG1959] Predicted transcriptional regulator |
|---|
| TIGRFAM ID | [TIGR00738] rrf2 family protein (putative transcriptional regulator) |
|---|
| 
|
Plasmid Coverage information |
| Num covering plasmid clones | 19 |
|---|
| Plasmid unclonability p-value | 1 |
|---|
| Plasmid hitchhiking | No |
|---|
| Plasmid clonability | normal |
|---|
| |
Fosmid Coverage information |
| Num covering fosmid clones | 22 |
|---|
| Fosmid unclonability p-value | 1 |
|---|
| Fosmid Hitchhiker | No |
|---|
| Fosmid clonability | normal |
|---|
| |
Sequence |
| Gene sequence | ATGCGACTCA CCGACTACAC CGACTACAGC CTGCGCACGC TGATCTATGT GGCCGTGCAT
CCCGACGTGC TGGTGACCAT CCAGCAGATC GCTGACGCGT TCGGCATTCC CAAGAACCAC
TTGATCAAGA TCGTGCAGGG GCTCGGGCAG AACGGCTTCC TGCATACCGT GCGGGGACGC
GCGGGCGGCA TCACGCTGGG GCGGCCCGCG GTCGAAATCA ACATCGGCGA CGTGGTGCGC
GCGACCGAGC CAGATTTCAG CCTGGTGGAA TGCTTCCACG TCAACGACAA CCACTGCATC
ATCACCCGTG TGTGCGGGTT GCGCGGCGTG TTGGCAGCCG CACTCCAGGC GTACTTCGAG
GTGCTGGACA CGTACACGCT GCAGGACCTG ATCGAGCGGC CCGCCGCGCT GAACCGGGTA
CTGGCCGAAG GCGTGGCGGT GCCGATGCCA CAGTCTGGCA AGGGCAGGAC ACCGAAGGCG
GCCCCGGCCG CCGGCTCACG CACGCGCAAG AGCGGCTGA
|
|---|
| Protein sequence | MRLTDYTDYS LRTLIYVAVH PDVLVTIQQI ADAFGIPKNH LIKIVQGLGQ NGFLHTVRGR
AGGITLGRPA VEINIGDVVR ATEPDFSLVE CFHVNDNHCI ITRVCGLRGV LAAALQAYFE
VLDTYTLQDL IERPAALNRV LAEGVAVPMP QSGKGRTPKA APAAGSRTRK SG
|
|---|
| |